Strain Fitness in Pseudomonas putida KT2440 around PP_4677

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
5,314,157	+		PP_4676	0.16	+0.4
5,314,158	-		PP_4676	0.17	+0.4
5,314,166	+		PP_4676	0.17	-0.1
5,314,166	+		PP_4676	0.17	+0.2
5,314,167	-		PP_4676	0.17	+1.8
5,314,167	-		PP_4676	0.17	-0.6
5,314,194	+		PP_4676	0.20	+1.8
5,314,194	+		PP_4676	0.20	+0.1
5,314,256	+		PP_4676	0.26	-0.9
5,314,257	-		PP_4676	0.26	+0.4
5,314,315	+		PP_4676	0.32	+0.3
5,314,316	+		PP_4676	0.32	-2.5
5,314,316	+		PP_4676	0.32	+0.2
5,314,317	-		PP_4676	0.32	-0.1
5,314,317	-		PP_4676	0.32	+1.7
5,314,317	-		PP_4676	0.32	+1.2
5,314,320	+		PP_4676	0.32	+0.4
5,314,320	+		PP_4676	0.32	+1.1
5,314,320	+		PP_4676	0.32	+0.6
5,314,321	-		PP_4676	0.32	+0.2
5,314,321	-		PP_4676	0.32	-0.7
5,314,377	+		PP_4676	0.38	+1.3
5,314,377	+		PP_4676	0.38	+0.8
5,314,377	+		PP_4676	0.38	-0.3
5,314,378	-		PP_4676	0.38	+0.6
5,314,378	-		PP_4676	0.38	+0.6
5,314,378	-		PP_4676	0.38	-0.3
5,314,378	-		PP_4676	0.38	+0.5
5,314,422	+		PP_4676	0.42	+1.0
5,314,422	+		PP_4676	0.42	-2.0
5,314,422	+		PP_4676	0.42	+0.8
5,314,422	+		PP_4676	0.42	-0.3
5,314,422	+		PP_4676	0.42	-2.2
5,314,423	-		PP_4676	0.42	-0.2
5,314,423	-		PP_4676	0.42	+0.7
5,314,457	+		PP_4676	0.46	-2.2
5,314,457	+		PP_4676	0.46	-0.7
5,314,458	-		PP_4676	0.46	-0.9
5,314,543	+		PP_4676	0.54	-0.2
5,314,544	-		PP_4676	0.54	-0.0
5,314,544	-		PP_4676	0.54	+0.9
5,314,559	+		PP_4676	0.56	-0.7
5,314,607	+		PP_4676	0.60	+0.4
5,314,607	+		PP_4676	0.60	+0.9
5,314,608	-		PP_4676	0.60	+1.3
5,314,608	-		PP_4676	0.60	-1.2
5,314,713	-		PP_4676	0.71	+0.3
5,314,713	-		PP_4676	0.71	+0.2
5,314,713	-		PP_4676	0.71	-0.7
5,314,724	+		PP_4676	0.72	+0.7
5,314,724	+		PP_4676	0.72	+1.0
5,314,724	+		PP_4676	0.72	+1.4
5,314,724	+		PP_4676	0.72	-0.0
5,314,845	-		PP_4676	0.84	-1.4
5,314,889	-		PP_4676	0.88	+0.8
5,314,937	+				-0.9
5,314,938	-				+1.4
5,314,938	-				+0.3
5,314,938	-				-1.3
5,315,013	+				+0.3
5,315,014	-				+0.1
5,315,032	+				+0.7
5,315,033	-				-0.7
5,315,033	-				+2.5
5,315,033	-				-0.1
5,315,038	+				+1.4
5,315,038	+				+2.3
5,315,039	-				-0.0
5,315,045	-				+1.6
5,315,072	-				+1.3
5,316,015	-				+1.1
5,316,015	-				-2.6
5,316,015	-				-0.4
5,316,015	-				-1.3
5,316,017	-				-1.2
5,316,084	+				+1.4
5,316,084	+				+1.7
5,316,085	-				+0.8
5,316,085	-				+0.3
5,316,085	-				-2.9
5,316,085	-				-1.4
5,316,208	-		PP_4678	0.12	-0.9
5,316,214	+		PP_4678	0.13	-2.0
5,316,215	-		PP_4678	0.13	-1.0
5,316,215	-		PP_4678	0.13	-1.2
5,316,215	-		PP_4678	0.13	-2.6
5,316,215	-		PP_4678	0.13	-1.4
5,316,324	+		PP_4678	0.24	-0.5
5,316,324	+		PP_4678	0.24	+0.9
5,316,324	+		PP_4678	0.24	-0.5
5,316,334	-		PP_4678	0.25	-1.0
5,316,357	+		PP_4678	0.27	-1.7
5,316,357	+		PP_4678	0.27	-0.8
5,316,384	+		PP_4678	0.30	+0.7
5,316,384	+		PP_4678	0.30	+0.0
5,316,384	+		PP_4678	0.30	-1.8
5,316,384	+		PP_4678	0.30	-0.6
5,316,385	-		PP_4678	0.30	-0.8
5,316,385	-		PP_4678	0.30	-0.8
5,316,385	-		PP_4678	0.30	+0.0
5,316,385	-		PP_4678	0.30	-3.0
5,316,395	+		PP_4678	0.31	-0.7
5,316,395	+		PP_4678	0.31	-2.5
5,316,395	+		PP_4678	0.31	-0.6
5,316,396	-		PP_4678	0.31	-2.7
5,316,396	-		PP_4678	0.31	-0.8
5,316,396	-		PP_4678	0.31	-0.7
5,316,429	+		PP_4678	0.34	-1.2
5,316,568	+		PP_4678	0.48	-2.3
5,316,587	+		PP_4678	0.50	-1.7
5,316,587	+		PP_4678	0.50	-1.9
5,316,588	-		PP_4678	0.50	-3.6
5,316,588	-		PP_4678	0.50	-1.0
5,316,600	+		PP_4678	0.51	+0.5
5,316,600	+		PP_4678	0.51	-1.6
5,316,601	-		PP_4678	0.51	-1.2
5,316,642	+		PP_4678	0.55	+0.7
5,316,642	+		PP_4678	0.55	+0.8
5,316,643	-		PP_4678	0.55	-1.0
5,316,643	-		PP_4678	0.55	+0.4
5,316,643	-		PP_4678	0.55	-0.9
5,316,643	-		PP_4678	0.55	-0.9
5,316,646	+		PP_4678	0.55	-1.5
5,316,646	+		PP_4678	0.55	-0.4
5,316,646	+		PP_4678	0.55	-1.1
5,316,762	+		PP_4678	0.67	-2.9
5,316,762	+		PP_4678	0.67	-3.4
5,316,762	+		PP_4678	0.67	-2.5
5,316,834	+		PP_4678	0.74	-1.1
5,316,834	+		PP_4678	0.74	-0.0
5,316,834	+		PP_4678	0.74	-0.3
5,316,835	-		PP_4678	0.74	-2.6
5,316,835	-		PP_4678	0.74	-0.9
5,316,899	-		PP_4678	0.80	-2.7