Strain Fitness in Pseudomonas putida KT2440 around PP_4668

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
5,293,653	+		PP_4667	0.52	-0.7
5,293,654	-		PP_4667	0.52	-3.8
5,293,676	-		PP_4667	0.53	-1.9
5,293,676	-		PP_4667	0.53	+0.0
5,293,953	+		PP_4667	0.72	-2.5
5,293,953	+		PP_4667	0.72	-0.6
5,293,953	+		PP_4667	0.72	+0.4
5,293,953	+		PP_4667	0.72	-1.0
5,293,953	+		PP_4667	0.72	-1.2
5,293,954	-		PP_4667	0.72	-1.5
5,293,954	-		PP_4667	0.72	-0.1
5,293,954	-		PP_4667	0.72	-1.0
5,294,179	+		PP_4667	0.86	-1.3
5,294,179	+				-0.7
5,294,179	+		PP_4667	0.86	+0.2
5,294,180	-		PP_4667	0.86	-1.1
5,294,180	-		PP_4667	0.86	-3.1
5,294,472	+				-0.5
5,294,472	+				-0.8
5,294,472	+				+1.1
5,294,473	-				-0.1
5,294,533	+				-1.3
5,294,533	+				-0.1
5,294,633	+		PP_4668	0.12	-1.3
5,294,633	+		PP_4668	0.12	-1.6
5,294,633	+		PP_4668	0.12	+0.2
5,294,634	-		PP_4668	0.12	+0.6
5,294,634	-		PP_4668	0.12	+0.3
5,294,680	+		PP_4668	0.17	-3.7
5,294,681	-		PP_4668	0.17	-2.0
5,294,751	-		PP_4668	0.24	-1.0
5,294,880	+		PP_4668	0.38	-3.7
5,294,881	-		PP_4668	0.38	+1.1
5,294,881	-		PP_4668	0.38	+0.1
5,294,881	-		PP_4668	0.38	-2.1
5,295,005	+		PP_4668	0.51	-0.4
5,295,005	+		PP_4668	0.51	-0.1
5,295,005	+		PP_4668	0.51	-0.4
5,295,005	+		PP_4668	0.51	-0.7
5,295,006	-		PP_4668	0.51	-1.6
5,295,006	-		PP_4668	0.51	-0.8
5,295,006	-		PP_4668	0.51	-0.6
5,295,006	-		PP_4668	0.51	-0.6
5,295,006	-				+1.9
5,295,006	-		PP_4668	0.51	+0.3
5,295,044	+		PP_4668	0.55	+0.9
5,295,045	-		PP_4668	0.55	-0.1
5,295,045	-		PP_4668	0.55	-0.6
5,295,122	+		PP_4668	0.63	-1.4
5,295,122	+		PP_4668	0.63	-3.3
5,295,123	-		PP_4668	0.64	-0.6
5,295,123	-		PP_4668	0.64	-0.7
5,295,159	-		PP_4668	0.67	-0.3
5,295,255	+		PP_4668	0.77	-3.3
5,295,255	+		PP_4668	0.77	-1.0
5,295,341	+		PP_4668	0.86	-0.2
5,295,341	+		PP_4668	0.86	-1.0
5,295,341	+		PP_4668	0.86	-2.2
5,295,342	-		PP_4668	0.87	-2.3
5,295,342	-		PP_4668	0.87	-0.5
5,295,393	-				-0.7
5,295,498	+				-0.3
5,295,499	-				+0.6
5,295,561	-				-0.9
5,295,570	+				-0.4
5,295,570	+				-1.3
5,295,571	-				-0.4
5,295,600	-				+1.4
5,295,776	+		PP_4669	0.35	+0.4
5,295,776	+		PP_4669	0.35	-0.2
5,295,776	+		PP_4669	0.35	-1.2
5,295,777	-		PP_4669	0.35	+0.7
5,296,073	-				+1.2
5,296,073	-				+0.5
5,296,073	-				-2.4
5,296,173	+				+1.2
5,296,173	+				+0.9
5,296,173	+				+1.1
5,296,230	+		PP_4670	0.11	-1.1
5,296,233	+		PP_4670	0.11	-0.2
5,296,234	-		PP_4670	0.11	-0.8
5,296,240	+		PP_4670	0.12	+0.4
5,296,346	-		PP_4670	0.20	-0.8
5,296,448	+		PP_4670	0.28	+0.6
5,296,448	+		PP_4670	0.28	-0.4
5,296,448	+		PP_4670	0.28	-1.2
5,296,448	+		PP_4670	0.28	-2.7
5,296,448	+		PP_4670	0.28	-0.8
5,296,449	-		PP_4670	0.28	-1.0
5,296,449	-		PP_4670	0.28	-0.5