Strain Fitness in Pseudomonas putida KT2440 around PP_4403

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
4,993,420	-		PP_4402	0.10	-2.0
4,993,420	-		PP_4402	0.10	-2.0
4,993,465	-		PP_4402	0.15	-3.0
4,993,578	+		PP_4402	0.26	-2.5
4,993,578	+		PP_4402	0.26	-1.8
4,993,578	+		PP_4402	0.26	-1.0
4,993,579	-		PP_4402	0.26	+0.6
4,993,579	-		PP_4402	0.26	-2.9
4,993,692	+		PP_4402	0.37	-1.3
4,993,692	+		PP_4402	0.37	-2.2
4,993,692	+		PP_4402	0.37	-3.3
4,993,692	+		PP_4402	0.37	-0.7
4,993,692	+		PP_4402	0.37	-0.3
4,993,693	-		PP_4402	0.37	-2.0
4,993,693	-		PP_4402	0.37	-1.3
4,993,693	-		PP_4402	0.37	-1.9
4,993,776	+		PP_4402	0.45	-2.3
4,993,777	-		PP_4402	0.45	-1.4
4,993,777	-		PP_4402	0.45	-0.3
4,993,777	-		PP_4402	0.45	-1.8
4,993,851	+		PP_4402	0.52	-0.3
4,993,852	-		PP_4402	0.52	-0.3
4,993,852	-		PP_4402	0.52	-3.2
4,993,852	-		PP_4402	0.52	-0.2
4,993,889	-		PP_4402	0.56	-0.6
4,993,932	+		PP_4402	0.60	-2.8
4,993,935	+		PP_4402	0.61	-2.7
4,993,935	+		PP_4402	0.61	-1.3
4,993,936	-		PP_4402	0.61	-1.7
4,993,942	+		PP_4402	0.61	-1.5
4,993,998	+		PP_4402	0.67	-2.6
4,993,999	-		PP_4402	0.67	-0.7
4,994,013	+		PP_4402	0.68	-4.0
4,994,014	-		PP_4402	0.68	-1.6
4,994,014	-		PP_4402	0.68	-2.3
4,994,100	-		PP_4402	0.77	+0.2
4,994,280	+				+0.9
4,994,668	+		PP_4403	0.26	-2.7
4,994,799	+		PP_4403	0.36	-0.3
4,994,799	+		PP_4403	0.36	-2.3
4,994,800	-		PP_4403	0.36	-0.9
4,994,800	-		PP_4403	0.36	-2.3
4,994,800	-		PP_4403	0.36	-2.8
4,994,829	-		PP_4403	0.39	-1.6
4,994,898	+		PP_4403	0.44	-1.3
4,994,899	-		PP_4403	0.44	-1.4
4,995,000	+		PP_4403	0.52	-1.9
4,995,000	+		PP_4403	0.52	-2.7
4,995,001	-		PP_4403	0.52	-3.0
4,995,001	-		PP_4403	0.52	-1.8
4,995,153	+		PP_4403	0.64	-1.8
4,995,153	+		PP_4403	0.64	-1.2
4,995,154	-		PP_4403	0.64	-0.2
4,995,314	+		PP_4403	0.77	-3.7
4,995,315	-		PP_4403	0.77	-3.0
4,995,315	-		PP_4403	0.77	-1.1
4,995,564	+				-1.4
4,995,565	+				-1.5
4,995,566	-				-1.2
4,995,623	-				-3.4
4,995,631	+				-2.7
4,995,632	-				-1.4
4,995,665	+				-3.9
4,995,665	+				-1.7
4,995,666	-				-1.0
4,995,666	-				-0.8
4,995,666	-				+0.2
4,995,669	+				-1.3
4,995,669	+				-0.7
4,995,669	+				-2.8
4,995,669	+				-1.3
4,995,669	+				-1.4
4,995,670	-				-2.4
4,995,670	-				-1.9
4,995,670	-				+0.5
4,995,670	-				-0.1
4,995,670	-				-2.7
4,995,670	-				-0.9
4,995,704	-				-2.0
4,995,814	+		PP_4404	0.15	-1.4
4,995,973	-		PP_4404	0.26	+0.1
4,996,063	+		PP_4404	0.33	-0.0
4,996,063	+		PP_4404	0.33	-1.6
4,996,063	+		PP_4404	0.33	-3.5
4,996,064	-				+0.8
4,996,064	-		PP_4404	0.33	-0.5
4,996,154	+		PP_4404	0.39	-1.0
4,996,154	+		PP_4404	0.39	-1.4
4,996,156	+		PP_4404	0.39	+0.5
4,996,182	-		PP_4404	0.41	-0.4
4,996,182	-		PP_4404	0.41	-3.4
4,996,241	+		PP_4404	0.46	-1.7
4,996,241	+		PP_4404	0.46	-1.8
4,996,293	+		PP_4404	0.49	-1.0
4,996,294	-		PP_4404	0.49	-1.5
4,996,294	-		PP_4404	0.49	-2.3
4,996,392	+		PP_4404	0.57	-3.3
4,996,392	+		PP_4404	0.57	-0.1
4,996,392	+		PP_4404	0.57	-1.9
4,996,393	-		PP_4404	0.57	-2.3
4,996,393	-		PP_4404	0.57	-0.6