Strain Fitness in Pseudomonas putida KT2440 around PP_4400

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
4,990,424	+		PP_4399	0.43	-0.2
4,990,425	-		PP_4399	0.43	-2.0
4,990,425	-		PP_4399	0.43	-0.6
4,990,683	+		PP_4399	0.64	+0.9
4,990,684	-		PP_4399	0.64	+0.8
4,990,684	-		PP_4399	0.64	+0.3
4,990,684	-		PP_4399	0.64	-2.3
4,990,770	-		PP_4399	0.71	+0.2
4,990,770	-		PP_4399	0.71	+0.8
4,990,770	-		PP_4399	0.71	-0.8
4,990,866	+		PP_4399	0.79	-0.2
4,990,867	-		PP_4399	0.79	-0.3
4,990,874	+		PP_4399	0.79	-1.4
4,990,875	-		PP_4399	0.79	+0.1
4,991,035	-				-1.7
4,991,233	+				-1.3
4,991,233	+				-0.2
4,991,233	+				-0.5
4,991,249	+				-1.6
4,991,249	+				-1.0
4,991,249	+				-2.0
4,991,249	+				-3.2
4,991,249	+				+1.6
4,991,249	+				-0.2
4,991,249	+				+0.4
4,991,250	-				+0.4
4,991,250	-				-1.3
4,991,250	-				-0.8
4,991,250	-				-1.0
4,991,250	-				-0.4
4,991,250	-				+0.3
4,991,281	+				+0.4
4,991,281	+				-0.4
4,991,282	-				-1.2
4,991,324	+				+0.1
4,991,410	-		PP_4400	0.10	-2.1
4,991,410	-		PP_4400	0.10	-2.4
4,991,410	-		PP_4400	0.10	-3.0
4,991,444	-		PP_4400	0.17	-1.7
4,991,444	-		PP_4400	0.17	-2.2
4,991,473	-		PP_4400	0.23	-0.6
4,991,550	+		PP_4400	0.39	-2.1
4,991,551	-		PP_4400	0.39	-1.2
4,991,551	-		PP_4400	0.39	-3.3
4,991,551	-		PP_4400	0.39	-4.1
4,991,638	+		PP_4400	0.57	+0.2
4,991,639	-		PP_4400	0.57	-3.7
4,991,845	+				-2.7
4,991,952	+				+0.7
4,991,953	-				-2.0
4,992,054	-				-2.6
4,992,197	+		PP_4401	0.12	-2.0
4,992,359	+		PP_4401	0.26	-3.3
4,992,359	+		PP_4401	0.26	-2.9
4,992,360	-		PP_4401	0.26	-1.5
4,992,360	-		PP_4401	0.26	-3.5
4,992,552	-		PP_4401	0.41	-3.3
4,992,552	-		PP_4401	0.41	-4.3
4,992,552	-		PP_4401	0.41	-1.9
4,992,552	-		PP_4401	0.41	-0.9
4,992,653	-		PP_4401	0.49	-3.9
4,992,689	-		PP_4401	0.52	-1.7
4,992,732	+		PP_4401	0.56	-3.5
4,992,732	+		PP_4401	0.56	-3.3
4,992,733	-		PP_4401	0.56	-2.5
4,992,733	-		PP_4401	0.56	-0.8
4,992,733	-		PP_4401	0.56	-3.0
4,992,734	+		PP_4401	0.56	-3.5