Strain Fitness in Pseudomonas putida KT2440 around PP_4396

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
4,986,072	+		PP_4394	0.42	-2.6
4,986,072	+		PP_4394	0.42	-1.7
4,986,102	+		PP_4394	0.46	-3.4
4,986,102	+		PP_4394	0.46	-0.3
4,986,505	+				-0.5
4,986,505	+				-1.6
4,986,505	+				-1.6
4,986,505	+				-0.1
4,986,505	+				-3.1
4,986,505	+				-2.0
4,986,505	+				+0.7
4,986,506	-				+0.0
4,986,506	-				+0.7
4,986,506	-				-0.4
4,986,506	-				-3.0
4,986,506	-				-0.5
4,986,506	-				-1.1
4,986,509	+				-0.1
4,986,509	+				-0.5
4,986,509	+				-0.9
4,986,510	-				+0.1
4,986,510	-				-0.5
4,986,510	-				-0.6
4,986,510	-				-0.1
4,986,510	-				+0.2
4,986,510	-				-0.2
4,986,554	+				+0.7
4,986,555	-				-0.2
4,986,614	-				-0.8
4,986,657	+				+0.1
4,986,994	+				+0.2
4,987,036	-				-1.3
4,987,036	-				-2.0
4,987,275	+		PP_4396	0.50	-0.0
4,987,275	+		PP_4396	0.50	-0.8
4,987,276	-		PP_4396	0.50	-1.3
4,987,448	+		PP_4396	0.87	-3.5
4,987,453	+		PP_4396	0.88	-0.3
4,987,515	-				-0.3
4,987,532	-				-0.7
4,987,549	-				-2.3
4,987,581	+				-1.1
4,987,581	+				-0.7
4,987,581	+				+1.1
4,987,581	+				+0.6
4,987,581	+				-0.3
4,987,582	-				-0.8
4,987,582	-				+0.4
4,987,582	-				-1.2
4,987,582	-				+0.2
4,987,728	+		PP_4397	0.19	-0.4
4,987,728	+		PP_4397	0.19	-1.2
4,987,728	+		PP_4397	0.19	+0.3
4,987,728	+		PP_4397	0.19	-0.3
4,987,729	-		PP_4397	0.19	-0.6
4,987,729	-		PP_4397	0.19	-1.4
4,987,729	-		PP_4397	0.19	-0.0
4,987,729	-		PP_4397	0.19	-0.7
4,987,729	-		PP_4397	0.19	-0.5
4,987,729	-		PP_4397	0.19	-0.2
4,987,849	+				+0.1
4,987,849	+		PP_4397	0.35	-0.0
4,987,850	-		PP_4397	0.35	-0.0
4,987,850	-		PP_4397	0.35	+0.5
4,987,850	-				-0.4
4,987,850	-		PP_4397	0.35	-2.5
4,987,912	-		PP_4397	0.44	+0.1
4,987,941	+		PP_4397	0.48	+1.4
4,987,941	+		PP_4397	0.48	+0.1
4,987,941	+		PP_4397	0.48	-0.3
4,987,941	+		PP_4397	0.48	+0.9
4,987,942	-		PP_4397	0.48	-1.7
4,987,982	-		PP_4397	0.53	-1.9
4,988,057	+		PP_4397	0.63	-1.2
4,988,128	-		PP_4397	0.73	+0.1
4,988,128	-		PP_4397	0.73	-0.8
4,988,128	-		PP_4397	0.73	-2.1
4,988,197	-		PP_4397	0.82	+0.8
4,988,197	-		PP_4397	0.82	-0.2
4,988,197	-		PP_4397	0.82	+0.1
4,988,283	+				+0.2
4,988,325	+				-0.7
4,988,325	+				-0.3
4,988,325	+				-1.1
4,988,326	-				-0.3
4,988,326	-				-1.6
4,988,326	-				-1.2
4,988,343	-				+0.4
4,988,343	-				-0.7
4,988,343	-				+0.3
4,988,426	-				-0.6