Strain Fitness in Pseudomonas putida KT2440 around PP_4377

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
4,966,806	+		PP_4376	0.36	-2.7
4,966,807	-		PP_4376	0.36	-0.9
4,966,807	-		PP_4376	0.36	-1.2
4,966,871	+		PP_4376	0.41	-1.8
4,966,872	-		PP_4376	0.41	+0.9
4,966,872	-		PP_4376	0.41	-3.4
4,966,872	-		PP_4376	0.41	-2.3
4,966,908	+		PP_4376	0.43	-3.5
4,966,909	-		PP_4376	0.43	-3.4
4,966,909	-		PP_4376	0.43	-0.3
4,966,914	+		PP_4376	0.44	-0.3
4,966,915	-		PP_4376	0.44	-0.3
4,966,915	-		PP_4376	0.44	-0.7
4,966,915	-		PP_4376	0.44	-0.2
4,966,915	-		PP_4376	0.44	-1.5
4,966,942	-		PP_4376	0.46	-0.2
4,966,942	-		PP_4376	0.46	-1.5
4,966,951	+		PP_4376	0.47	-1.4
4,966,951	+		PP_4376	0.47	-0.8
4,966,952	-		PP_4376	0.47	-2.3
4,966,992	+		PP_4376	0.50	+1.7
4,966,993	-		PP_4376	0.50	-0.7
4,966,993	-		PP_4376	0.50	-2.9
4,966,993	-		PP_4376	0.50	-0.2
4,966,995	+				-0.4
4,966,996	-		PP_4376	0.50	-2.5
4,966,996	-		PP_4376	0.50	-2.0
4,967,030	+		PP_4376	0.52	-0.2
4,967,098	-		PP_4376	0.57	-2.1
4,967,134	+		PP_4376	0.60	-1.4
4,967,134	+		PP_4376	0.60	-1.9
4,967,199	+		PP_4376	0.65	-1.7
4,967,255	+		PP_4376	0.69	-1.6
4,967,256	-		PP_4376	0.69	-3.1
4,967,301	+		PP_4376	0.72	-0.9
4,967,301	+		PP_4376	0.72	-1.2
4,967,302	-		PP_4376	0.72	-1.3
4,967,309	-		PP_4376	0.73	-1.0
4,967,387	+		PP_4376	0.79	-1.3
4,967,392	-		PP_4376	0.79	-1.7
4,967,478	+		PP_4376	0.85	-1.3
4,967,478	+		PP_4376	0.85	+0.2
4,967,478	+		PP_4376	0.85	-2.5
4,967,479	-		PP_4376	0.85	-2.3
4,967,479	-		PP_4376	0.85	+0.9
4,967,479	-		PP_4376	0.85	-3.1
4,967,479	-		PP_4376	0.85	-0.5
4,967,479	-		PP_4376	0.85	-1.8
4,967,509	-		PP_4376	0.88	-3.2
4,967,523	+		PP_4376	0.89	-2.0
4,967,523	+		PP_4376	0.89	-1.1
4,967,523	+		PP_4376	0.89	-2.7
4,967,524	-		PP_4376	0.89	-0.6
4,967,524	-		PP_4376	0.89	-3.4
4,967,524	-		PP_4376	0.89	-2.8
4,967,556	+				-1.2
4,967,556	+				-0.0
4,967,556	+				-1.6
4,967,556	+				-1.5
4,967,557	-				+0.7
4,967,571	+				-2.2
4,967,653	-				-2.7
4,967,667	+				-0.9
4,967,682	+				-0.4
4,967,682	+				-1.8
4,967,683	-				-2.7
4,967,683	-				-1.0
4,967,683	-				+0.7
4,967,683	-				+0.4
4,967,683	-				-1.4
4,967,683	-				+0.7
4,967,685	-				-1.0
4,967,685	-				+0.5
4,967,685	-				-1.2
4,967,761	+				-1.1
4,967,762	-				-1.7
4,967,778	+				+0.5
4,967,938	-		PP_4377	0.52	-0.0
4,967,938	-		PP_4377	0.52	-2.4
4,967,941	+		PP_4377	0.52	-0.3
4,967,941	+		PP_4377	0.52	-1.0
4,967,941	+		PP_4377	0.52	-1.8
4,967,942	-		PP_4377	0.53	+0.5
4,967,949	+		PP_4377	0.55	-1.4
4,967,950	-		PP_4377	0.55	-0.3
4,967,950	-		PP_4377	0.55	+0.1
4,968,009	+		PP_4377	0.72	-0.5
4,968,098	+				+0.8
4,968,099	-				-0.0
4,968,099	-				+3.8
4,968,099	-				-0.6
4,968,099	-				+1.3
4,968,118	+				-0.7
4,968,140	-				-0.8
4,968,140	-				-2.0
4,968,140	-				+0.2
4,968,308	-				+0.1
4,968,314	-				-0.9
4,968,491	-		PP_4378	0.15	+0.1
4,968,491	-		PP_4378	0.15	-2.5
4,968,491	-		PP_4378	0.15	-0.6
4,968,682	+		PP_4378	0.24	-3.6
4,968,683	-		PP_4378	0.24	-0.3
4,968,683	-		PP_4378	0.24	-2.2
4,968,683	-		PP_4378	0.24	-0.8
4,968,687	-		PP_4378	0.25	+0.4
4,968,716	+		PP_4378	0.26	-3.8
4,968,717	-		PP_4378	0.26	-2.5
4,968,717	-		PP_4378	0.26	-3.0
4,968,739	+		PP_4378	0.27	-3.3
4,968,740	-		PP_4378	0.27	-0.9
4,968,740	-		PP_4378	0.27	-2.9
4,968,875	-		PP_4378	0.34	-2.6
4,968,991	+		PP_4378	0.39	-0.3
4,968,991	+		PP_4378	0.39	-0.4
4,968,991	+		PP_4378	0.39	-3.2
4,968,992	-		PP_4378	0.39	-3.5
4,969,087	+		PP_4378	0.44	-0.6
4,969,096	+		PP_4378	0.44	-2.1
4,969,096	+		PP_4378	0.44	-1.2
4,969,104	-		PP_4378	0.45	-0.8