Strain Fitness in Pseudomonas putida KT2440 around PP_4169

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
4,709,561	+				-0.3
4,709,619	+				+1.2
4,709,811	+		PP_4167	0.29	-0.0
4,709,812	-		PP_4167	0.29	-2.0
4,709,812	-		PP_4167	0.29	-1.7
4,709,815	+		PP_4167	0.30	+0.6
4,709,815	+		PP_4167	0.30	-0.4
4,709,815	+		PP_4167	0.30	+1.6
4,709,815	+		PP_4167	0.30	+0.8
4,709,816	-		PP_4167	0.30	-0.7
4,709,816	-		PP_4167	0.30	-0.8
4,709,816	-		PP_4167	0.30	+0.5
4,709,816	-		PP_4167	0.30	-0.3
4,709,980	+		PP_4167	0.66	+0.4
4,709,980	+		PP_4167	0.66	+0.6
4,709,981	-		PP_4167	0.66	-0.1
4,709,984	+		PP_4167	0.67	+1.6
4,709,985	-		PP_4167	0.67	-0.3
4,709,985	-		PP_4167	0.67	+1.5
4,709,985	-		PP_4167	0.67	+0.6
4,710,337	+		PP_4168	0.59	+2.1
4,710,338	-		PP_4168	0.59	-1.5
4,710,338	-		PP_4168	0.59	+0.4
4,710,360	+		PP_4168	0.66	-0.7
4,710,360	+		PP_4168	0.66	-0.2
4,710,361	-		PP_4168	0.66	+1.1
4,710,471	-				+1.8
4,710,536	-				+0.5
4,710,646	+		PP_4169	0.13	-0.5
4,710,646	+		PP_4169	0.13	-1.6
4,710,646	+				-0.8
4,710,647	-		PP_4169	0.13	-1.0
4,710,647	-		PP_4169	0.13	+0.8
4,711,542	-				-1.4
4,711,544	-				-2.9
4,711,587	+				-2.0
4,711,587	+				-0.0
4,711,588	-				-0.2
4,711,602	-				-0.4
4,711,629	+				-2.5
4,711,630	-				-1.6
4,711,630	-				-0.3
4,711,694	-				+0.6
4,711,694	-				-2.7
4,711,694	-				-2.0
4,711,694	-				+0.6
4,711,731	+				-0.8
4,711,732	-				-1.4
4,711,806	+				-2.3
4,711,806	+				-1.7
4,711,935	+				-1.5
4,711,998	+		PP_4171	0.11	-1.1
4,711,998	+		PP_4171	0.11	-0.3
4,712,048	+		PP_4171	0.13	-0.3
4,712,049	-		PP_4171	0.13	-0.3
4,712,049	-		PP_4171	0.13	-0.8
4,712,088	+		PP_4171	0.15	-0.5
4,712,089	-		PP_4171	0.15	-0.9
4,712,089	-		PP_4171	0.15	-0.4
4,712,109	+		PP_4171	0.16	-0.7
4,712,112	-		PP_4171	0.16	-1.7
4,712,201	-		PP_4171	0.20	-1.1
4,712,211	-		PP_4171	0.21	-0.2
4,712,275	+		PP_4171	0.24	-0.4
4,712,276	-		PP_4171	0.24	-0.2
4,712,276	-		PP_4171	0.24	+0.4
4,712,322	-		PP_4171	0.26	-0.3
4,712,322	-		PP_4171	0.26	-1.2
4,712,322	-		PP_4171	0.26	+0.9
4,712,322	-		PP_4171	0.26	-0.3
4,712,534	+		PP_4171	0.36	-1.9
4,712,534	+		PP_4171	0.36	-1.5
4,712,534	+		PP_4171	0.36	-1.2
4,712,534	+		PP_4171	0.36	-2.9
4,712,534	+		PP_4171	0.36	-1.4
4,712,535	-		PP_4171	0.36	-2.3
4,712,535	-		PP_4171	0.36	-1.2
4,712,540	+		PP_4171	0.36	-1.9
4,712,541	-		PP_4171	0.37	-0.5