Strain Fitness in Pseudomonas putida KT2440 around PP_4119

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4118 and PP_4119 are separated by 383 nucleotidesPP_4119 and PP_4120 are separated by 9 nucleotidesPP_4120 and PP_4121 are separated by 79 nucleotides PP_4118: PP_4118 - putative Membrane protein, at 4,655,106 to 4,655,801 _4118 PP_4119: PP_4119 - NADH-quinone oxidoreductase subunit A, at 4,656,185 to 4,656,598 _4119 PP_4120: PP_4120 - NADH-quinone oxidoreductase subunit B, at 4,656,608 to 4,657,285 _4120 PP_4121: PP_4121 - NADH-quinone oxidoreductase subunit C/D, at 4,657,365 to 4,659,146 _4121 Position (kb) 4656 4657Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4655.190 kb on + strand, within PP_4118at 4655.191 kb on - strand, within PP_4118at 4655.191 kb on - strand, within PP_4118at 4655.191 kb on - strand, within PP_4118at 4655.191 kb on - strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strandat 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.192 kb on + strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strandat 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.193 kb on - strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strandat 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.194 kb on + strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.195 kb on - strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.196 kb on + strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.197 kb on - strand, within PP_4118at 4655.296 kb on - strand, within PP_4118at 4655.412 kb on + strand, within PP_4118at 4655.412 kb on + strand, within PP_4118at 4655.413 kb on - strand, within PP_4118at 4655.413 kb on - strand, within PP_4118at 4655.413 kb on - strand, within PP_4118at 4655.413 kb on - strand, within PP_4118at 4655.413 kb on - strand, within PP_4118at 4655.425 kb on - strand, within PP_4118at 4655.436 kb on - strand, within PP_4118at 4655.501 kb on - strand, within PP_4118at 4655.685 kb on + strand, within PP_4118at 4655.686 kb on - strand, within PP_4118at 4655.762 kb on - strandat 4655.828 kb on - strandat 4655.946 kb on + strandat 4655.951 kb on - strandat 4655.966 kb on - strandat 4656.015 kb on + strandat 4656.021 kb on + strandat 4656.028 kb on - strandat 4656.062 kb on + strandat 4656.135 kb on + strandat 4656.169 kb on + strandat 4656.169 kb on + strandat 4656.172 kb on - strandat 4656.172 kb on - strandat 4656.181 kb on + strandat 4656.182 kb on - strandat 4656.384 kb on - strand, within PP_4119at 4656.499 kb on - strandat 4656.524 kb on + strand, within PP_4119at 4656.529 kb on - strand, within PP_4119at 4656.529 kb on - strand, within PP_4119at 4656.614 kb on + strandat 4656.614 kb on + strandat 4656.614 kb on + strandat 4656.615 kb on - strandat 4656.615 kb on - strandat 4656.615 kb on - strandat 4656.791 kb on + strand, within PP_4120at 4656.815 kb on + strand, within PP_4120at 4656.815 kb on + strand, within PP_4120at 4656.962 kb on + strandat 4656.963 kb on - strand, within PP_4120at 4657.029 kb on - strand, within PP_4120at 4657.029 kb on - strand, within PP_4120at 4657.029 kb on - strand, within PP_4120at 4657.029 kb on - strand, within PP_4120at 4657.082 kb on + strand, within PP_4120at 4657.082 kb on + strand, within PP_4120at 4657.082 kb on + strand, within PP_4120at 4657.083 kb on - strand, within PP_4120at 4657.083 kb on - strand, within PP_4120at 4657.083 kb on - strand, within PP_4120at 4657.083 kb on - strand, within PP_4120at 4657.199 kb on + strand, within PP_4120at 4657.200 kb on - strand, within PP_4120at 4657.200 kb on - strand, within PP_4120at 4657.254 kb on + strandat 4657.338 kb on + strandat 4657.338 kb on + strandat 4657.383 kb on - strandat 4657.383 kb on - strandat 4657.383 kb on - strandat 4657.398 kb on + strandat 4657.399 kb on - strandat 4657.399 kb on - strandat 4657.557 kb on + strand, within PP_4121at 4657.558 kb on - strand, within PP_4121at 4657.569 kb on + strand, within PP_4121

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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4,655,190 + PP_4118 0.12 +0.9
4,655,191 - PP_4118 0.12 +2.6
4,655,191 - PP_4118 0.12 +0.9
4,655,191 - PP_4118 0.12 +1.4
4,655,191 - PP_4118 0.12 +1.9
4,655,192 + PP_4118 0.12 -1.5
4,655,192 + PP_4118 0.12 +0.1
4,655,192 + PP_4118 0.12 +0.6
4,655,192 + PP_4118 0.12 +0.9
4,655,192 + PP_4118 0.12 +0.2
4,655,192 + PP_4118 0.12 +0.4
4,655,192 + PP_4118 0.12 -0.9
4,655,192 + PP_4118 0.12 +1.1
4,655,192 + PP_4118 0.12 +0.9
4,655,192 + PP_4118 0.12 +1.7
4,655,192 + +1.7
4,655,192 + PP_4118 0.12 -0.4
4,655,192 + PP_4118 0.12 +0.1
4,655,192 + PP_4118 0.12 +1.8
4,655,192 + PP_4118 0.12 +1.0
4,655,193 - PP_4118 0.12 +0.4
4,655,193 - PP_4118 0.12 -0.9
4,655,193 - PP_4118 0.12 -0.6
4,655,193 - PP_4118 0.12 +1.7
4,655,193 - PP_4118 0.12 +1.0
4,655,193 - +0.0
4,655,193 - PP_4118 0.12 -0.2
4,655,193 - PP_4118 0.12 +1.4
4,655,193 - PP_4118 0.12 +1.8
4,655,193 - PP_4118 0.12 +1.4
4,655,193 - PP_4118 0.12 +1.4
4,655,193 - PP_4118 0.12 +2.3
4,655,193 - PP_4118 0.12 +0.9
4,655,193 - PP_4118 0.12 -0.9
4,655,194 + PP_4118 0.13 +0.2
4,655,194 + PP_4118 0.13 +0.8
4,655,194 + +2.2
4,655,194 + PP_4118 0.13 -0.3
4,655,194 + PP_4118 0.13 +1.6
4,655,194 + PP_4118 0.13 +0.3
4,655,194 + PP_4118 0.13 +1.5
4,655,194 + PP_4118 0.13 -2.4
4,655,194 + PP_4118 0.13 +0.4
4,655,194 + PP_4118 0.13 -0.3
4,655,194 + PP_4118 0.13 +1.0
4,655,194 + PP_4118 0.13 +1.0
4,655,194 + PP_4118 0.13 +0.6
4,655,194 + PP_4118 0.13 +0.6
4,655,194 + PP_4118 0.13 +0.2
4,655,194 + PP_4118 0.13 -0.1
4,655,195 - PP_4118 0.13 +0.1
4,655,195 - PP_4118 0.13 +1.0
4,655,195 - PP_4118 0.13 +0.4
4,655,195 - PP_4118 0.13 +1.0
4,655,195 - PP_4118 0.13 +0.8
4,655,195 - PP_4118 0.13 +1.5
4,655,195 - PP_4118 0.13 +1.5
4,655,195 - PP_4118 0.13 +0.7
4,655,195 - PP_4118 0.13 +0.6
4,655,195 - PP_4118 0.13 +1.9
4,655,195 - PP_4118 0.13 +2.0
4,655,195 - PP_4118 0.13 +0.7
4,655,195 - PP_4118 0.13 +1.5
4,655,196 + PP_4118 0.13 -0.1
4,655,196 + PP_4118 0.13 +0.8
4,655,196 + PP_4118 0.13 +2.9
4,655,196 + PP_4118 0.13 -0.1
4,655,196 + PP_4118 0.13 +0.3
4,655,196 + PP_4118 0.13 -1.3
4,655,196 + PP_4118 0.13 +0.4
4,655,196 + PP_4118 0.13 +0.8
4,655,196 + PP_4118 0.13 -1.6
4,655,196 + PP_4118 0.13 +0.8
4,655,196 + PP_4118 0.13 +0.4
4,655,196 + PP_4118 0.13 +0.4
4,655,196 + PP_4118 0.13 +0.1
4,655,196 + PP_4118 0.13 +1.5
4,655,196 + PP_4118 0.13 -0.4
4,655,196 + PP_4118 0.13 +0.6
4,655,196 + PP_4118 0.13 -0.1
4,655,196 + PP_4118 0.13 +0.8
4,655,197 - PP_4118 0.13 +0.0
4,655,197 - PP_4118 0.13 +2.2
4,655,197 - PP_4118 0.13 +1.2
4,655,197 - PP_4118 0.13 +0.2
4,655,197 - PP_4118 0.13 +0.3
4,655,197 - PP_4118 0.13 +1.6
4,655,197 - PP_4118 0.13 +1.0
4,655,197 - PP_4118 0.13 +0.8
4,655,197 - PP_4118 0.13 +0.7
4,655,197 - PP_4118 0.13 +0.6
4,655,197 - PP_4118 0.13 +1.4
4,655,197 - PP_4118 0.13 -0.6
4,655,197 - PP_4118 0.13 +1.0
4,655,197 - PP_4118 0.13 +1.4
4,655,296 - PP_4118 0.27 +2.9
4,655,412 + PP_4118 0.44 -0.3
4,655,412 + PP_4118 0.44 -2.8
4,655,413 - PP_4118 0.44 +0.3
4,655,413 - PP_4118 0.44 +3.2
4,655,413 - PP_4118 0.44 +3.0
4,655,413 - PP_4118 0.44 +1.8
4,655,413 - PP_4118 0.44 +0.0
4,655,425 - PP_4118 0.46 +1.6
4,655,436 - PP_4118 0.47 +1.4
4,655,501 - PP_4118 0.57 +1.9
4,655,685 + PP_4118 0.83 -1.5
4,655,686 - PP_4118 0.83 +2.6
4,655,762 - +1.8
4,655,828 - +1.5
4,655,946 + +1.7
4,655,951 - +3.0
4,655,966 - +0.0
4,656,015 + -1.9
4,656,021 + -0.9
4,656,028 - -1.0
4,656,062 + +2.0
4,656,135 + +0.4
4,656,169 + +0.8
4,656,169 + -0.9
4,656,172 - +3.3
4,656,172 - +3.2
4,656,181 + +4.2
4,656,182 - +2.8
4,656,384 - PP_4119 0.48 +3.2
4,656,499 - +2.7
4,656,524 + PP_4119 0.82 +2.7
4,656,529 - PP_4119 0.83 +2.8
4,656,529 - PP_4119 0.83 +2.6
4,656,614 + +1.7
4,656,614 + +2.7
4,656,614 + +2.2
4,656,615 - +2.9
4,656,615 - +3.4
4,656,615 - +2.8
4,656,791 + PP_4120 0.27 +3.3
4,656,815 + PP_4120 0.31 +1.7
4,656,815 + PP_4120 0.31 +4.0
4,656,962 + +1.9
4,656,963 - PP_4120 0.52 +3.3
4,657,029 - PP_4120 0.62 +2.6
4,657,029 - PP_4120 0.62 +3.4
4,657,029 - PP_4120 0.62 +3.1
4,657,029 - PP_4120 0.62 +2.7
4,657,082 + PP_4120 0.70 +3.3
4,657,082 + PP_4120 0.70 +3.5
4,657,082 + PP_4120 0.70 +2.8
4,657,083 - PP_4120 0.70 +1.9
4,657,083 - PP_4120 0.70 +1.3
4,657,083 - PP_4120 0.70 +3.8
4,657,083 - PP_4120 0.70 +2.2
4,657,199 + PP_4120 0.87 +3.2
4,657,200 - PP_4120 0.87 +2.1
4,657,200 - PP_4120 0.87 +3.8
4,657,254 + -1.6
4,657,338 + +2.1
4,657,338 + -0.7
4,657,383 - +1.8
4,657,383 - +2.4
4,657,383 - +1.0
4,657,398 + +3.8
4,657,399 - +2.5
4,657,399 - +1.5
4,657,557 + PP_4121 0.11 +2.2
4,657,558 - PP_4121 0.11 +3.7
4,657,569 + PP_4121 0.11 +3.9

Or see this region's nucleotide sequence