Strain Fitness in Pseudomonas putida KT2440 around PP_3757

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
4,285,362	-				-0.0
4,285,440	-				-0.8
4,285,440	-				-0.2
4,285,601	+		PP_3756	0.25	+1.0
4,285,601	+		PP_3756	0.25	-0.8
4,285,634	+		PP_3756	0.30	-0.8
4,285,655	+		PP_3756	0.34	+0.1
4,285,655	+		PP_3756	0.34	+0.6
4,285,655	+		PP_3756	0.34	+1.2
4,285,847	+		PP_3756	0.67	-0.7
4,285,847	+		PP_3756	0.67	-0.3
4,285,847	+		PP_3756	0.67	+0.4
4,285,924	-		PP_3756	0.80	-2.4
4,286,123	-				+1.6
4,286,258	-		PP_3757	0.45	+0.3
4,286,373	+		PP_3757	0.76	+1.1
4,286,374	-				+1.6
4,286,391	+		PP_3757	0.80	-0.9
4,286,391	+		PP_3757	0.80	+1.2
4,286,484	+				-1.6
4,286,484	+				-0.4
4,286,484	+				+0.9
4,286,484	+				+0.7
4,286,484	+				-0.7
4,286,485	-				+0.5
4,286,510	+				-0.2
4,286,511	-				+0.4
4,286,651	+		PP_3758	0.12	-1.5
4,286,651	+		PP_3758	0.12	-0.3
4,286,651	+		PP_3758	0.12	+0.8
4,286,651	+		PP_3758	0.12	-0.2
4,286,652	-		PP_3758	0.12	+1.2
4,286,652	-		PP_3758	0.12	-0.0
4,286,652	-		PP_3758	0.12	-0.7
4,286,652	-		PP_3758	0.12	-0.8
4,286,652	-		PP_3758	0.12	-0.0
4,286,854	+		PP_3758	0.28	-0.1
4,286,854	+		PP_3758	0.28	+0.1
4,286,855	-		PP_3758	0.28	-1.0
4,286,855	-		PP_3758	0.28	-2.5
4,286,855	-		PP_3758	0.28	+0.1
4,287,193	-		PP_3758	0.56	-0.1
4,287,437	+		PP_3758	0.76	-1.0
4,287,453	-		PP_3758	0.77	+0.0