Strain Fitness in Pseudomonas putida KT2440 around PP_3724

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
4,247,289	+		PP_3723	0.61	+0.7
4,247,290	-		PP_3723	0.61	-0.2
4,247,369	-		PP_3723	0.66	-0.7
4,247,369	-		PP_3723	0.66	+1.6
4,247,776	+				-1.3
4,247,776	+				+0.8
4,247,777	-				+1.0
4,247,777	-				+1.6
4,247,777	-				+0.4
4,247,777	-				+1.5
4,247,777	-				+1.2
4,247,777	-				-0.9
4,247,777	-				+0.3
4,247,777	-				-0.6
4,247,777	-				-1.0
4,247,777	-				+0.3
4,247,810	+				+0.7
4,247,811	-				+1.6
4,247,862	-				+0.4
4,247,862	-				+1.2
4,247,862	-				+1.1
4,247,862	-				+2.5
4,247,969	-				+3.0
4,248,037	-				+2.9
4,248,037	-				+2.5
4,248,266	+		PP_3724	0.17	+0.6
4,248,267	-		PP_3724	0.17	+2.1
4,248,267	-		PP_3724	0.17	+2.2
4,248,336	+		PP_3724	0.20	+0.2
4,248,336	+		PP_3724	0.20	+1.6
4,248,337	-		PP_3724	0.20	+1.6
4,248,337	-		PP_3724	0.20	+1.6
4,248,459	-		PP_3724	0.26	+0.5
4,248,509	-		PP_3724	0.28	+0.1
4,248,667	-		PP_3724	0.36	-0.9
4,248,826	-		PP_3724	0.43	-0.3
4,249,003	-		PP_3724	0.52	+0.5
4,249,237	-		PP_3724	0.63	-0.2
4,249,488	+		PP_3724	0.75	-1.3
4,249,488	+		PP_3724	0.75	-0.8
4,249,528	-		PP_3724	0.76	-1.5
4,249,528	-		PP_3724	0.76	+0.6
4,249,735	-		PP_3724	0.86	+0.5
4,249,735	-		PP_3724	0.86	+0.5
4,249,735	-		PP_3724	0.86	+0.1
4,249,735	-		PP_3724	0.86	-0.0
4,250,083	-				+2.6
4,250,083	-				+2.8
4,250,364	-		PP_3725	0.28	+1.4
4,250,567	+		PP_3725	0.45	-0.7
4,250,567	+		PP_3725	0.45	+1.5
4,250,567	+		PP_3725	0.45	-1.5
4,250,576	+		PP_3725	0.46	-1.0
4,250,577	-				+2.0
4,250,684	+		PP_3725	0.55	-0.8
4,250,684	+		PP_3725	0.55	+0.3
4,250,684	+		PP_3725	0.55	-0.0
4,250,685	-		PP_3725	0.55	+0.2
4,250,685	-		PP_3725	0.55	+0.1
4,250,685	-		PP_3725	0.55	+1.0
4,250,685	-		PP_3725	0.55	+0.8
4,250,685	-				+1.4
4,250,879	+		PP_3725	0.72	+0.4
4,250,879	+		PP_3725	0.72	+1.0
4,250,996	+		PP_3725	0.82	+0.9
4,250,996	+		PP_3725	0.82	-0.9
4,250,997	-		PP_3725	0.82	+1.9