Strain Fitness in Pseudomonas putida KT2440 around PP_3507

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
3,976,021	+		PP_3506	0.16	-1.9
3,976,078	+		PP_3506	0.22	-0.1
3,976,078	+		PP_3506	0.22	-2.7
3,976,165	-		PP_3506	0.31	-2.9
3,976,440	-		PP_3506	0.58	-1.9
3,976,560	+		PP_3506	0.70	-2.3
3,976,853	+				-2.1
3,976,854	-				-0.8
3,977,038	+				+0.5
3,977,038	+				-1.8
3,977,038	+				-0.7
3,977,039	-				-1.9
3,977,039	-				-0.3
3,977,039	-				-2.6
3,977,143	+				-1.9
3,977,266	+		PP_3507	0.11	-1.1
3,977,266	+				-0.1
3,977,329	+		PP_3507	0.12	-2.1
3,977,329	+				-2.1
3,977,329	+		PP_3507	0.12	-2.1
3,977,330	-		PP_3507	0.12	-0.7
3,977,330	-		PP_3507	0.12	-0.8
3,977,330	-		PP_3507	0.12	-0.8
3,977,330	-		PP_3507	0.12	+0.6
3,977,333	-		PP_3507	0.12	+0.0
3,977,333	-		PP_3507	0.12	-0.7
3,977,452	+		PP_3507	0.15	-2.8
3,977,476	+				-0.1
3,977,477	-		PP_3507	0.16	-3.4
3,978,049	+		PP_3507	0.31	-2.7
3,978,050	-		PP_3507	0.31	-1.2
3,978,050	-		PP_3507	0.31	-1.9
3,978,050	-		PP_3507	0.31	-1.8
3,978,214	-		PP_3507	0.36	-3.5
3,978,214	-		PP_3507	0.36	-2.9
3,978,373	-		PP_3507	0.40	-1.0
3,978,509	+		PP_3507	0.44	-0.3
3,978,592	+		PP_3507	0.46	-0.0
3,978,592	+		PP_3507	0.46	-1.3
3,978,592	+		PP_3507	0.46	-0.2
3,978,592	+		PP_3507	0.46	-3.4
3,978,593	-		PP_3507	0.46	-2.7
3,978,593	-		PP_3507	0.46	-0.2
3,978,596	+		PP_3507	0.46	-0.2
3,978,596	+		PP_3507	0.46	-2.9
3,978,597	-		PP_3507	0.46	-0.8
3,978,615	+		PP_3507	0.46	-0.4
3,978,615	+		PP_3507	0.46	-1.4
3,978,616	-		PP_3507	0.46	-2.3
3,978,616	-		PP_3507	0.46	+0.9
3,978,739	+		PP_3507	0.50	-1.3
3,978,739	+		PP_3507	0.50	-2.2
3,978,781	+		PP_3507	0.51	-1.3
3,978,781	+		PP_3507	0.51	-1.0
3,978,782	-		PP_3507	0.51	-1.2
3,978,886	+		PP_3507	0.54	-2.2
3,978,887	-		PP_3507	0.54	-0.9
3,978,887	-		PP_3507	0.54	-1.9
3,979,076	-		PP_3507	0.59	-3.2
3,979,474	+		PP_3507	0.69	-3.1
3,979,474	+		PP_3507	0.69	-2.5
3,979,655	+		PP_3507	0.74	-0.3
3,979,656	-		PP_3507	0.74	-1.0
3,979,838	+		PP_3507	0.79	-3.5
3,980,011	+		PP_3507	0.84	-0.8
3,980,011	+		PP_3507	0.84	-2.4
3,980,012	-		PP_3507	0.84	-0.7
3,980,057	-		PP_3507	0.85	-2.2
3,980,095	+		PP_3507	0.86	-2.3
3,980,096	-		PP_3507	0.86	-1.2
3,980,096	-		PP_3507	0.86	-1.4
3,980,137	+		PP_3507	0.87	-2.0
3,980,137	+		PP_3507	0.87	-3.7
3,980,137	+		PP_3507	0.87	-1.1
3,980,137	+		PP_3507	0.87	-1.8
3,980,419	+				-1.0
3,980,420	-				-0.6
3,980,420	-				-4.3
3,980,778	+		PP_3508	0.13	-1.1
3,980,778	+		PP_3508	0.13	-3.6
3,980,779	-		PP_3508	0.14	-0.9
3,981,354	+		PP_3508	0.67	-2.1
3,981,354	+		PP_3508	0.67	-3.8
3,981,355	-		PP_3508	0.68	-2.1