Strain Fitness in Pseudomonas putida KT2440 around PP_3020

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
3,406,258	+		PP_3018	0.82	+0.8
3,406,258	+		PP_3018	0.82	-1.0
3,406,258	+		PP_3018	0.82	+0.7
3,406,259	-		PP_3018	0.82	-0.3
3,406,259	-		PP_3018	0.82	-0.1
3,406,271	-		PP_3018	0.87	+0.3
3,406,271	-		PP_3018	0.87	-0.2
3,406,285	-				+0.4
3,406,294	+				+0.8
3,406,295	-				+1.5
3,406,295	-				-0.6
3,406,355	+				+1.4
3,406,476	-		PP_3019	0.24	-1.8
3,406,621	-		PP_3019	0.43	-0.2
3,406,689	+		PP_3019	0.53	-1.2
3,406,689	+		PP_3019	0.53	+0.2
3,406,689	+				-0.0
3,406,690	-		PP_3019	0.53	-1.0
3,406,690	-		PP_3019	0.53	-0.1
3,406,690	-		PP_3019	0.53	-1.3
3,406,725	+		PP_3019	0.57	-0.8
3,406,725	+		PP_3019	0.57	-0.2
3,406,772	+		PP_3019	0.64	+0.1
3,406,773	-		PP_3019	0.64	-0.1
3,407,024	+				+0.6
3,407,079	+				+0.7
3,407,079	+				+0.6
3,407,080	-				+0.0
3,407,080	-				+0.0
3,407,080	-				+1.1
3,407,080	-				-1.3
3,407,080	-				+0.8
3,407,080	-				+0.1
3,407,082	+				+0.7
3,407,083	-				+1.8
3,407,169	+				-0.6
3,407,169	+				+0.0
3,407,169	+				+0.5
3,407,235	+				-0.1
3,407,254	+				-3.0
3,407,255	-				+0.8
3,407,255	-				-0.1
3,407,255	-				-1.7
3,407,654	-		PP_3020	0.55	+0.3
3,407,698	+		PP_3020	0.61	-3.7
3,407,698	+		PP_3020	0.61	-2.7
3,407,699	-		PP_3020	0.61	-2.8
3,407,699	-		PP_3020	0.61	-0.6
3,408,098	-		PP_3021	0.27	+0.0
3,408,098	-		PP_3021	0.27	-0.6
3,408,105	-		PP_3021	0.29	+0.1
3,408,158	+		PP_3021	0.37	-0.4
3,408,159	-		PP_3021	0.37	-0.3
3,408,299	+		PP_3021	0.60	+0.5
3,408,300	-		PP_3021	0.60	-0.4
3,408,300	-		PP_3021	0.60	-1.4
3,408,300	-		PP_3021	0.60	+0.1
3,408,300	-		PP_3021	0.60	+0.7
3,408,308	+				+1.8
3,408,309	-		PP_3021	0.62	+0.9
3,408,413	-		PP_3021	0.79	+0.7
3,408,596	-				-0.3
3,408,605	+				+0.3
3,408,605	+				+0.8
3,408,605	+				-0.2
3,408,606	-				-1.4
3,408,606	-				-0.0
3,408,606	-				+1.2
3,408,606	-				+0.8
3,408,606	-				-0.3
3,408,612	+				+0.7
3,408,612	+				-0.9
3,408,613	-				-0.6
3,408,613	-				+0.6
3,408,638	+				-0.1
3,408,638	+				-1.8
3,408,713	+		PP_3022	0.11	-0.4
3,408,714	-		PP_3022	0.11	+0.4
3,408,785	+		PP_3022	0.20	+0.1
3,408,785	+				+1.3
3,408,785	+		PP_3022	0.20	-0.0
3,408,786	-		PP_3022	0.20	+0.5
3,408,786	-		PP_3022	0.20	-0.8
3,408,799	-		PP_3022	0.21	-1.5