Strain Fitness in Pseudomonas putida KT2440 around PP_2974

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
3,373,602	+		PP_2971	0.73	-1.5
3,373,602	+		PP_2971	0.73	+1.1
3,373,627	-		PP_2971	0.76	-2.3
3,373,653	+		PP_2971	0.78	-2.8
3,373,653	+		PP_2971	0.78	+0.8
3,373,654	-		PP_2971	0.78	-1.9
3,373,654	-		PP_2971	0.78	+1.4
3,373,654	-		PP_2971	0.78	-0.4
3,373,779	+				-0.3
3,373,779	+				+0.8
3,373,780	-				-1.0
3,373,780	-				+1.3
3,373,970	+		PP_2972	0.85	+1.1
3,373,970	+		PP_2972	0.85	+0.0
3,373,971	-		PP_2972	0.85	+1.2
3,374,082	+				+0.9
3,374,083	-				-0.9
3,374,083	-				-1.4
3,374,094	+		PP_2973	0.12	-0.4
3,374,094	+		PP_2973	0.12	-0.9
3,374,094	+		PP_2973	0.12	-1.8
3,374,095	-		PP_2973	0.12	-0.4
3,374,095	-		PP_2973	0.12	+0.3
3,374,095	-				+2.3
3,374,095	-		PP_2973	0.12	-0.0
3,374,098	+		PP_2973	0.13	-1.4
3,374,099	-		PP_2973	0.13	+0.5
3,374,099	-		PP_2973	0.13	+0.1
3,374,160	-		PP_2973	0.30	-3.4
3,374,162	+		PP_2973	0.31	-0.2
3,374,228	+		PP_2973	0.49	-0.1
3,374,228	+		PP_2973	0.49	+0.2
3,374,262	-		PP_2973	0.59	+0.1
3,374,277	-		PP_2973	0.63	-1.1
3,374,322	+		PP_2973	0.76	-0.8
3,374,322	+		PP_2973	0.76	+0.9
3,374,382	+				-1.0
3,374,383	-				+1.2
3,374,383	-				-0.3
3,374,404	+				-0.9
3,374,418	+				-0.7
3,374,418	+				+1.2
3,374,440	+				-0.4
3,374,500	+				-1.5
3,374,541	+				-0.5
3,374,542	-				-0.5
3,374,574	+				+1.2
3,374,574	+				+1.0
3,374,664	+		PP_2974	0.13	+0.0
3,374,672	+		PP_2974	0.14	+1.1
3,374,674	+		PP_2974	0.14	-2.4
3,374,675	-		PP_2974	0.14	+0.4
3,374,675	-		PP_2974	0.14	-0.9
3,374,766	+		PP_2974	0.20	+0.2
3,374,766	+		PP_2974	0.20	-1.6
3,374,767	-		PP_2974	0.20	-2.6
3,374,767	-		PP_2974	0.20	+0.2
3,374,771	-		PP_2974	0.20	-0.6
3,374,965	+		PP_2974	0.32	-1.1
3,374,967	+		PP_2974	0.32	-0.2
3,374,967	+		PP_2974	0.32	+0.4
3,374,967	+		PP_2974	0.32	+0.4
3,374,968	-		PP_2974	0.32	-0.4
3,374,968	-		PP_2974	0.32	+1.1
3,374,968	-		PP_2974	0.32	-0.4
3,375,035	-		PP_2974	0.36	+2.1
3,375,035	-		PP_2974	0.36	+1.0
3,375,035	-		PP_2974	0.36	-0.5
3,375,058	+		PP_2974	0.37	+0.6
3,375,082	+		PP_2974	0.39	+1.0
3,375,106	-		PP_2974	0.40	+1.0
3,375,124	+		PP_2974	0.41	+0.5
3,375,124	+		PP_2974	0.41	+0.2
3,375,124	+		PP_2974	0.41	-0.3
3,375,153	+		PP_2974	0.43	-0.6
3,375,180	-		PP_2974	0.45	+0.3
3,375,200	+		PP_2974	0.46	-0.8
3,375,279	+		PP_2974	0.51	+1.2
3,375,279	+		PP_2974	0.51	-0.2
3,375,279	+		PP_2974	0.51	+1.8
3,375,280	-		PP_2974	0.51	+0.3
3,375,569	+		PP_2974	0.68	+1.2
3,375,625	+		PP_2974	0.72	+0.8
3,375,625	+		PP_2974	0.72	+1.5
3,375,625	+		PP_2974	0.72	+1.3
3,375,650	+		PP_2974	0.73	-1.2
3,375,650	+		PP_2974	0.73	+1.0
3,375,650	+		PP_2974	0.73	+1.5
3,375,651	-		PP_2974	0.73	+0.5
3,375,651	-		PP_2974	0.73	+1.1
3,375,656	+		PP_2974	0.74	+0.5
3,375,731	-		PP_2974	0.78	+1.4
3,375,753	+		PP_2974	0.79	+0.7
3,375,754	-		PP_2974	0.79	-0.1
3,375,787	+		PP_2974	0.81	-2.6
3,375,787	+		PP_2974	0.81	+0.9
3,375,842	+		PP_2974	0.85	-1.2
3,375,842	+		PP_2974	0.85	-0.1
3,375,842	+		PP_2974	0.85	+0.6
3,375,843	-		PP_2974	0.85	-0.4
3,375,843	-		PP_2974	0.85	+1.4
3,375,843	-		PP_2974	0.85	-0.2
3,375,949	+				-2.1
3,375,949	+				-0.7
3,375,950	-				+0.5
3,375,998	-				+1.7
3,376,007	+				-0.1
3,376,008	-				-1.3
3,376,023	+				-0.2
3,376,023	+				+0.3
3,376,069	-				-1.0
3,376,092	-				-0.2
3,376,124	-				+1.0
3,376,137	-				-0.3
3,376,273	+		PP_2975	0.43	-0.5
3,376,273	+		PP_2975	0.43	-1.1
3,376,273	+		PP_2975	0.43	+0.2
3,376,273	+		PP_2975	0.43	+1.0
3,376,273	+		PP_2975	0.43	+0.2
3,376,273	+		PP_2975	0.43	-1.1
3,376,274	-		PP_2975	0.43	-1.0
3,376,274	-		PP_2975	0.43	+0.9
3,376,366	+		PP_2975	0.78	-2.4
3,376,367	-		PP_2975	0.78	-0.5
3,376,367	-		PP_2975	0.78	-0.1
3,376,367	-		PP_2975	0.78	+0.6
3,376,424	-				+0.7
3,376,490	-				+0.9
3,376,573	-				-0.2
3,376,623	+		PP_2976	0.16	+0.3
3,376,630	+		PP_2976	0.18	+1.2
3,376,987	+		PP_2977	0.12	+0.6
3,376,988	-		PP_2977	0.12	+0.5
3,377,070	+		PP_2977	0.21	+1.1