Strain Fitness in Pseudomonas putida KT2440 around PP_2641

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
3,023,956	+		PP_2639	0.73	+0.0
3,023,956	+		PP_2639	0.73	+0.1
3,023,956	+		PP_2639	0.73	+1.6
3,023,956	+		PP_2639	0.73	+0.9
3,023,957	-		PP_2639	0.74	-0.3
3,023,957	-		PP_2639	0.74	+0.2
3,024,006	-		PP_2639	0.79	-2.7
3,024,012	+		PP_2639	0.80	+0.6
3,024,293	+				+0.2
3,024,340	+				+1.7
3,024,380	-				+0.6
3,024,428	-		PP_2640	0.19	+0.6
3,024,522	+		PP_2640	0.40	+2.0
3,024,523	-		PP_2640	0.40	+0.7
3,024,523	-		PP_2640	0.40	-1.9
3,024,523	-		PP_2640	0.40	-0.5
3,024,789	+				+1.2
3,024,800	+				+0.2
3,024,800	+				+1.3
3,024,800	+				-0.1
3,024,801	-				-1.2
3,024,837	+				-0.7
3,024,837	+				+0.9
3,024,838	-				-0.2
3,024,838	-				+0.3
3,024,959	-				-0.5
3,025,023	+		PP_2641	0.10	-0.0
3,025,024	-		PP_2641	0.10	-2.9
3,025,114	+		PP_2641	0.15	+1.7
3,025,114	+		PP_2641	0.15	+1.6
3,025,115	-		PP_2641	0.15	-0.8
3,025,116	+				-0.3
3,025,117	-		PP_2641	0.16	-1.4
3,025,228	+		PP_2641	0.22	+0.6
3,025,228	+		PP_2641	0.22	+1.3
3,025,236	+		PP_2641	0.22	+0.1
3,025,236	+		PP_2641	0.22	+1.0
3,025,298	+		PP_2641	0.26	+0.9
3,025,299	-		PP_2641	0.26	-0.0
3,025,299	-		PP_2641	0.26	-1.0
3,025,362	+		PP_2641	0.29	+1.3
3,025,363	-		PP_2641	0.29	-0.8
3,025,405	+		PP_2641	0.32	+1.9
3,025,442	-		PP_2641	0.34	-0.5
3,025,522	-		PP_2641	0.38	-1.3
3,025,692	+		PP_2641	0.48	+0.5
3,025,692	+		PP_2641	0.48	-1.6
3,025,692	+		PP_2641	0.48	+0.9
3,025,692	+		PP_2641	0.48	+0.3
3,025,692	+		PP_2641	0.48	+0.8
3,025,693	-		PP_2641	0.48	+0.2
3,025,742	+		PP_2641	0.50	+0.8
3,025,742	+		PP_2641	0.50	+0.9
3,025,742	+		PP_2641	0.50	+0.7
3,025,744	+		PP_2641	0.50	+1.9
3,025,744	+		PP_2641	0.50	+1.1
3,025,854	+		PP_2641	0.57	+1.1
3,025,855	-		PP_2641	0.57	-0.7
3,025,904	+		PP_2641	0.59	+0.5
3,026,154	+		PP_2641	0.73	+0.6
3,026,154	+		PP_2641	0.73	+1.3
3,026,155	-		PP_2641	0.73	-2.9
3,026,353	-		PP_2641	0.84	-1.0
3,026,593	+				+1.5
3,026,593	+				+0.4
3,026,593	+				+1.6
3,026,593	+				+1.1
3,026,593	+				+1.0
3,026,594	-				-0.1
3,026,594	-				+0.8
3,026,595	+				+1.8
3,026,596	-				-2.2
3,026,651	-				-1.0
3,026,822	+		PP_2642	0.12	-0.3
3,026,822	+		PP_2642	0.12	+1.2
3,026,823	-		PP_2642	0.13	+1.0
3,026,969	+		PP_2642	0.22	+1.0
3,027,081	-		PP_2642	0.30	-0.7
3,027,217	+		PP_2642	0.39	+0.6
3,027,218	-		PP_2642	0.39	-0.9
3,027,437	+		PP_2642	0.54	+0.4
3,027,437	+		PP_2642	0.54	+1.3
3,027,437	+		PP_2642	0.54	+1.9
3,027,437	+		PP_2642	0.54	-1.3
3,027,438	-		PP_2642	0.54	+0.2
3,027,438	-		PP_2642	0.54	-2.5
3,027,438	-		PP_2642	0.54	-0.7
3,027,438	-		PP_2642	0.54	-1.7
3,027,442	-		PP_2642	0.54	-1.7
3,027,442	-		PP_2642	0.54	-2.4
3,027,548	+		PP_2642	0.61	+0.6
3,027,549	-		PP_2642	0.61	-0.9
3,027,555	-		PP_2642	0.62	-2.2
3,027,581	+		PP_2642	0.63	+0.9