Strain Fitness in Pseudomonas putida KT2440 around PP_2558

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
2,905,052	+		PP_2557	0.12	+1.1
2,905,125	+				+1.1
2,905,126	+		PP_2557	0.21	-0.4
2,905,126	-		PP_2557	0.21	-2.0
2,905,126	-		PP_2557	0.21	+0.8
2,905,219	-		PP_2557	0.32	+0.1
2,905,310	+		PP_2557	0.42	+1.5
2,905,559	-		PP_2557	0.71	+1.1
2,905,559	-		PP_2557	0.71	+0.9
2,905,559	-		PP_2557	0.71	-0.6
2,905,559	-		PP_2557	0.71	+0.3
2,905,645	+		PP_2557	0.81	-1.1
2,905,749	+				-0.4
2,905,842	+				-1.8
2,905,842	+				+0.6
2,905,842	+				+0.1
2,905,843	-				+0.4
2,905,979	+				-0.2
2,906,008	+				+0.1
2,906,009	-				+1.4
2,906,009	-				+0.7
2,906,023	-				+0.5
2,906,036	+				+0.9
2,906,056	-				+0.0
2,906,056	-				+0.5
2,906,074	+				+0.9
2,906,074	+				-0.7
2,906,075	-				+0.4
2,906,130	+				+1.2
2,906,130	+				+1.6
2,906,169	+		PP_2558	0.11	+2.0
2,906,170	-		PP_2558	0.11	-0.2
2,906,170	-		PP_2558	0.11	-1.0
2,906,170	-		PP_2558	0.11	-2.8
2,906,212	+		PP_2558	0.14	+1.5
2,906,213	-		PP_2558	0.14	+1.1
2,906,213	-		PP_2558	0.14	-0.4
2,906,434	-		PP_2558	0.30	-0.6
2,906,592	+		PP_2558	0.42	+0.3
2,906,592	+		PP_2558	0.42	-0.6
2,906,592	+		PP_2558	0.42	+0.3
2,906,592	+		PP_2558	0.42	-0.2
2,906,593	-		PP_2558	0.42	+1.0
2,906,730	+		PP_2558	0.52	-1.1
2,906,730	+				+0.9
2,906,731	-		PP_2558	0.52	+0.3
2,906,731	-		PP_2558	0.52	+0.9
2,906,731	-		PP_2558	0.52	-0.1
2,906,946	+		PP_2558	0.68	+0.6
2,906,947	-		PP_2558	0.68	-0.4
2,906,947	-		PP_2558	0.68	+0.8
2,907,007	-		PP_2558	0.72	-1.1
2,907,099	+		PP_2558	0.79	+0.1
2,907,100	-		PP_2558	0.79	+1.6
2,907,100	-		PP_2558	0.79	+1.9
2,907,100	-		PP_2558	0.79	+0.3
2,907,100	-		PP_2558	0.79	+0.6
2,907,157	-		PP_2558	0.83	+0.7
2,907,247	-				+1.2
2,907,261	+				-1.8
2,907,823	+		PP_2559	0.35	-0.1
2,907,824	-		PP_2559	0.35	-2.8
2,907,905	-		PP_2559	0.41	-0.6
2,908,048	+		PP_2559	0.52	-0.5
2,908,048	+		PP_2559	0.52	+0.7
2,908,048	+		PP_2559	0.52	+0.7
2,908,049	-		PP_2559	0.52	-0.5
2,908,361	-				+0.8