Strain Fitness in Pseudomonas putida KT2440 around PP_2422

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
2,768,848	+				-0.7
2,768,848	+				+0.8
2,769,134	+				+0.4
2,769,230	+		PP_2421	0.18	-3.2
2,769,230	+		PP_2421	0.18	-0.7
2,769,230	+		PP_2421	0.18	-0.9
2,769,230	+		PP_2421	0.18	-0.3
2,769,230	+		PP_2421	0.18	+1.3
2,769,230	+		PP_2421	0.18	+1.6
2,769,230	+		PP_2421	0.18	+0.5
2,769,230	+		PP_2421	0.18	+1.1
2,769,231	-		PP_2421	0.18	-1.3
2,769,458	+		PP_2421	0.59	-1.3
2,769,459	-		PP_2421	0.59	+1.4
2,769,512	+		PP_2421	0.69	-1.4
2,769,512	+		PP_2421	0.69	+0.0
2,769,513	-		PP_2421	0.69	+1.1
2,769,513	-		PP_2421	0.69	-0.1
2,769,513	-		PP_2421	0.69	-1.3
2,769,618	-		PP_2421	0.88	+0.5
2,769,824	+		PP_2422	0.12	+0.4
2,770,034	+		PP_2422	0.71	-1.5
2,770,035	-		PP_2422	0.72	-3.5
2,770,035	-		PP_2422	0.72	-1.3
2,770,087	+		PP_2422	0.86	-0.6
2,770,088	-		PP_2422	0.87	-1.3
2,770,088	-		PP_2422	0.87	-0.9
2,770,088	-				+1.6
2,770,095	+		PP_2422	0.89	-0.7
2,770,096	-		PP_2422	0.89	-1.6
2,770,250	+				-1.2
2,770,251	-				-0.1
2,770,298	+				-1.8
2,770,299	-				+0.6
2,770,299	-				+0.4
2,770,301	+				+0.2
2,770,301	+				+0.2
2,770,353	-		PP_2423	0.12	+0.8
2,770,470	-		PP_2423	0.25	-1.4
2,770,535	+		PP_2423	0.32	+1.5
2,770,535	+		PP_2423	0.32	-1.3
2,770,536	-		PP_2423	0.33	+0.6
2,770,536	-		PP_2423	0.33	-0.9
2,770,544	+		PP_2423	0.33	-1.1
2,770,611	-		PP_2423	0.41	+2.7
2,770,611	-		PP_2423	0.41	+0.5
2,770,650	-		PP_2423	0.45	+1.2
2,770,667	+		PP_2423	0.47	-1.2
2,770,668	-		PP_2423	0.47	+1.6
2,770,814	+		PP_2423	0.63	-1.1
2,770,814	+		PP_2423	0.63	+0.2
2,770,815	-		PP_2423	0.64	-1.9
2,770,865	+		PP_2423	0.69	+0.4
2,770,865	+		PP_2423	0.69	-1.2
2,770,865	+		PP_2423	0.69	+0.4
2,770,865	+		PP_2423	0.69	+0.5
2,770,866	-		PP_2423	0.69	-0.2
2,770,891	+		PP_2423	0.72	-1.0
2,770,980	-		PP_2423	0.82	+0.6
2,770,980	-		PP_2423	0.82	-0.8
2,771,009	+		PP_2423	0.85	+0.6
2,771,009	+		PP_2423	0.85	-2.6
2,771,009	+		PP_2423	0.85	-1.3
2,771,099	+				-2.5
2,771,100	-				-3.0
2,771,100	-				+0.3
2,771,100	-				+1.3
2,771,121	+				-0.4
2,771,121	+				-0.1
2,771,122	-				+2.7
2,771,122	-				+0.3
2,771,125	+				+0.6
2,771,125	+				+1.5
2,771,125	+				+0.4
2,771,126	-				+0.3