Strain Fitness in Pseudomonas putida KT2440 around PP_2364

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
2,696,210	+		PP_2363	0.11	+0.4
2,696,236	+		PP_2363	0.14	-0.1
2,696,385	+		PP_2363	0.29	-0.8
2,696,385	+		PP_2363	0.29	-0.7
2,696,431	-		PP_2363	0.34	-0.2
2,696,480	+		PP_2363	0.39	+1.4
2,696,505	+		PP_2363	0.42	+0.5
2,696,505	+		PP_2363	0.42	+0.1
2,696,505	+		PP_2363	0.42	-0.4
2,696,506	-		PP_2363	0.42	-1.5
2,696,506	-		PP_2363	0.42	+0.3
2,696,506	-		PP_2363	0.42	-1.5
2,696,506	-		PP_2363	0.42	+0.4
2,696,506	-		PP_2363	0.42	+1.2
2,696,506	-		PP_2363	0.42	+0.7
2,696,506	-		PP_2363	0.42	-0.1
2,696,506	-		PP_2363	0.42	+0.2
2,696,508	-		PP_2363	0.42	-0.5
2,696,508	-		PP_2363	0.42	-0.2
2,696,547	+		PP_2363	0.46	-0.3
2,696,547	+		PP_2363	0.46	-0.1
2,696,547	+		PP_2363	0.46	+0.2
2,696,548	-		PP_2363	0.46	+1.5
2,696,583	+		PP_2363	0.50	-0.2
2,696,584	-		PP_2363	0.50	-0.0
2,696,584	-		PP_2363	0.50	+0.3
2,696,611	+		PP_2363	0.53	-0.4
2,696,755	+		PP_2363	0.67	-0.7
2,696,755	+		PP_2363	0.67	+0.5
2,696,755	+		PP_2363	0.67	+0.5
2,696,791	+		PP_2363	0.71	+0.1
2,696,791	+		PP_2363	0.71	-1.0
2,696,857	-		PP_2363	0.78	-1.8
2,696,857	-		PP_2363	0.78	-0.1
2,696,857	-		PP_2363	0.78	-2.5
2,696,857	-		PP_2363	0.78	-0.4
2,696,857	-		PP_2363	0.78	+0.3
2,696,865	+		PP_2363	0.79	+0.4
2,696,865	+		PP_2363	0.79	-0.4
2,696,866	-		PP_2363	0.79	+1.1
2,696,866	-		PP_2363	0.79	-1.7
2,696,866	-		PP_2363	0.79	-0.1
2,696,956	+		PP_2363	0.88	+0.4
2,696,956	+		PP_2363	0.88	+0.4
2,696,956	+		PP_2363	0.88	+0.6
2,696,957	-		PP_2363	0.88	+0.7
2,696,988	+				-0.3
2,696,988	+				+0.4
2,696,989	-				-2.7
2,696,989	-				+0.5
2,696,989	-				+0.2
2,696,990	+				+0.4
2,696,990	+				-0.3
2,696,991	-				-0.2
2,697,003	+				+0.8
2,697,003	+				-0.3
2,697,004	-				+0.0
2,697,004	-				+0.5
2,697,036	+				-2.5
2,697,357	+		PP_2364	0.18	-0.1
2,697,359	+		PP_2364	0.18	-0.1
2,697,359	+		PP_2364	0.18	+1.8
2,697,359	+		PP_2364	0.18	+0.2
2,697,360	-		PP_2364	0.18	+0.9
2,697,360	-		PP_2364	0.18	+1.5
2,697,406	-		PP_2364	0.22	+1.2
2,697,527	+		PP_2364	0.33	+0.5
2,697,527	+		PP_2364	0.33	-0.5
2,697,527	+		PP_2364	0.33	+0.7
2,697,528	-		PP_2364	0.33	+1.4
2,697,528	-		PP_2364	0.33	-0.3
2,697,950	+		PP_2364	0.70	+0.8
2,698,003	-		PP_2364	0.74	-0.9
2,698,047	-		PP_2364	0.78	+0.3
2,698,086	-		PP_2364	0.82	+0.9
2,698,086	-		PP_2364	0.82	+0.4
2,698,169	+		PP_2364	0.89	+2.1
2,698,208	-				+1.5
2,698,234	+				+0.7
2,698,235	-				+0.8
2,698,235	-				+1.4
2,698,240	+				+0.7
2,698,240	+				-0.2
2,698,241	-				+0.4
2,698,241	-				+0.2
2,698,256	-				+2.0
2,698,326	-				-0.6
2,698,331	+				+0.2
2,698,332	-				+0.6
2,698,336	+				-2.3
2,698,336	+				+0.3
2,698,336	+				+1.2
2,698,336	+				-0.6
2,698,336	+				+0.2
2,698,337	-				-0.6
2,698,337	-				-0.7
2,698,337	-				+0.1
2,698,337	-				-0.0
2,698,338	+				+0.1
2,698,338	+				+0.7
2,698,338	+				-1.9
2,698,511	+				+0.7
2,698,512	-				-0.6
2,698,780	+		PP_2365	0.44	+0.5
2,699,081	+		PP_2365	0.83	-1.7
2,699,081	+		PP_2365	0.83	+1.2
2,699,082	-		PP_2365	0.83	+0.1
2,699,082	-		PP_2365	0.83	+0.2
2,699,082	-		PP_2365	0.83	-0.1
2,699,082	-		PP_2365	0.83	+1.6
2,699,106	+		PP_2365	0.86	-0.7
2,699,106	+		PP_2365	0.86	-0.3
2,699,107	-		PP_2365	0.86	-0.3
2,699,136	-				+1.6
2,699,206	+				+0.4
2,699,222	+				-0.9
2,699,223	-				+0.1
2,699,249	+				+1.2