Strain Fitness in Pseudomonas putida KT2440 around PP_1842

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
2,064,616	-		PP_1841	0.52	+0.8
2,064,838	-		PP_1841	0.80	+1.9
2,064,843	-		PP_1841	0.81	+1.1
2,064,843	-		PP_1841	0.81	+0.8
2,064,843	-		PP_1841	0.81	+1.2
2,064,843	-		PP_1841	0.81	-0.7
2,064,857	-		PP_1841	0.82	-0.2
2,064,860	+		PP_1841	0.83	+0.0
2,064,997	+				+1.8
2,065,029	+				+0.2
2,065,100	+				-0.3
2,065,100	+				+0.5
2,065,100	+				+0.8
2,065,101	-				-0.1
2,065,101	-				+0.1
2,065,101	-				+1.1
2,065,101	-				+1.3
2,065,118	+				-1.8
2,065,181	+				+0.7
2,065,276	+				-0.4
2,065,276	+				-1.4
2,065,276	+				-0.6
2,065,276	+				+0.6
2,065,277	-				+0.3
2,065,277	-				+1.9
2,065,277	-				+0.2
2,065,278	+				-1.2
2,065,278	+				-0.4
2,065,278	+				+1.0
2,065,278	+				-3.4
2,065,278	+				+0.8
2,065,278	+				+1.0
2,065,278	+				-0.2
2,065,279	-				-2.0
2,065,279	-				+0.4
2,065,279	-				-1.4
2,065,290	+				-0.4
2,065,290	+				-0.8
2,065,290	+				+0.5
2,065,290	+				-1.7
2,065,291	-				-1.0
2,065,291	-				+0.7
2,065,291	-				-0.3
2,065,309	-				-0.6
2,065,309	-				-1.0
2,065,372	+				-0.5
2,065,373	-				+0.8
2,065,373	-				+0.8
2,065,377	-				-0.4
2,065,377	-				-0.7
2,065,390	+				+0.7
2,065,394	+				-0.6
2,065,395	-				-1.5
2,065,395	-				+1.6
2,065,395	-				+1.4
2,065,455	+				-0.3
2,065,456	-				+2.3
2,065,456	-				+1.3
2,065,456	-				+1.7
2,065,465	+				+0.9
2,065,465	+				+1.4
2,065,466	-				+0.1
2,065,466	-				+2.0
2,065,488	+				-0.4
2,065,489	-				+0.6
2,065,520	+				+1.0
2,065,520	+				+1.7
2,065,520	+				+1.9
2,065,526	+				+2.4
2,065,526	+				+1.0
2,065,527	-				+0.3
2,065,527	-				+1.1
2,065,527	-				+1.0
2,065,587	+				+1.0
2,065,657	-		PP_1842	0.18	+1.1
2,065,657	-		PP_1842	0.18	+2.3
2,065,707	+		PP_1842	0.24	+1.0
2,065,707	+		PP_1842	0.24	+1.2
2,065,708	-		PP_1842	0.25	+0.7
2,065,765	+		PP_1842	0.32	+1.7
2,065,788	+		PP_1842	0.36	+0.9
2,065,788	+		PP_1842	0.36	+1.0
2,065,788	+		PP_1842	0.36	-2.3
2,066,100	+		PP_1842	0.78	+2.1
2,066,100	+		PP_1842	0.78	+1.2
2,066,100	+		PP_1842	0.78	-0.0
2,066,133	+				-1.2
2,066,133	+		PP_1842	0.82	+1.7
2,066,133	+		PP_1842	0.82	+1.9
2,066,133	+		PP_1842	0.82	+1.3
2,066,134	-		PP_1842	0.83	+1.8
2,066,222	+				+1.8
2,066,259	+				-0.0
2,066,333	+				-2.4
2,066,333	+				+0.5
2,066,334	-				-0.8
2,066,334	-				-0.2
2,066,334	-				-0.9
2,066,334	-				-1.2
2,066,378	+				+0.5
2,066,378	+				-2.0
2,066,384	+				-2.7
2,066,426	+		PP_1843	0.13	+0.5
2,066,610	-		PP_1843	0.32	-0.2
2,066,687	+		PP_1843	0.40	+0.2
2,066,764	+		PP_1843	0.48	+0.2
2,066,764	+		PP_1843	0.48	+0.7
2,066,764	+		PP_1843	0.48	+0.1
2,066,765	-				+0.1
2,066,765	-		PP_1843	0.48	-0.7
2,066,819	+		PP_1843	0.53	-0.4
2,066,820	-		PP_1843	0.53	-0.0
2,066,849	+		PP_1843	0.56	-0.7
2,066,954	+		PP_1843	0.67	-0.6
2,066,955	-		PP_1843	0.67	+0.1
2,066,973	+		PP_1843	0.69	-2.2
2,066,973	+		PP_1843	0.69	+0.1
2,066,974	-		PP_1843	0.69	+0.7
2,066,974	-		PP_1843	0.69	-1.1
2,066,974	-		PP_1843	0.69	-1.1
2,067,020	+		PP_1843	0.74	-1.1
2,067,020	-		PP_1843	0.74	+0.4
2,067,245	+				+0.0