Strain Fitness in Pseudomonas putida KT2440 around PP_1700

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
1,893,857	+				-0.5
1,893,858	-				-0.4
1,893,874	+				+1.1
1,893,874	+				+0.4
1,893,874	+				+1.6
1,893,874	+				+1.3
1,893,875	-				+0.9
1,893,986	+		PP_1699	0.13	+0.8
1,893,986	+		PP_1699	0.13	+0.6
1,893,987	-		PP_1699	0.13	+0.1
1,894,047	+		PP_1699	0.20	+1.1
1,894,048	-		PP_1699	0.21	+0.1
1,894,048	-		PP_1699	0.21	-2.4
1,894,201	-		PP_1699	0.39	+0.3
1,894,478	+		PP_1699	0.72	+0.1
1,894,479	-		PP_1699	0.72	-0.8
1,894,479	-		PP_1699	0.72	+0.3
1,894,550	+		PP_1699	0.80	+0.6
1,894,720	+				-1.3
1,894,721	-				+0.3
1,894,763	+				+1.4
1,895,062	+		PP_1700	0.15	-0.7
1,895,266	-		PP_1700	0.25	+1.1
1,895,394	+		PP_1700	0.32	-1.3
1,895,395	-		PP_1700	0.32	-1.2
1,895,395	-		PP_1700	0.32	-0.5
1,895,395	-		PP_1700	0.32	+0.9
1,895,443	-		PP_1700	0.34	-0.1
1,895,613	+		PP_1700	0.43	+0.5
1,895,613	+		PP_1700	0.43	-0.6
1,895,614	-		PP_1700	0.43	-0.3
1,895,635	-		PP_1700	0.44	-0.0
1,895,827	+		PP_1700	0.53	+1.3
1,895,827	+		PP_1700	0.53	-0.3
1,895,931	+		PP_1700	0.59	+0.4
1,895,938	+		PP_1700	0.59	-0.5
1,895,939	-		PP_1700	0.59	-0.2
1,895,946	+		PP_1700	0.59	-1.1
1,895,947	-		PP_1700	0.59	+0.2
1,895,947	-		PP_1700	0.59	-0.5
1,895,947	-		PP_1700	0.59	+0.7
1,896,061	+		PP_1700	0.65	+0.2
1,896,132	+		PP_1700	0.69	+0.7
1,896,132	+		PP_1700	0.69	-0.2
1,896,132	+		PP_1700	0.69	-1.8
1,896,132	+		PP_1700	0.69	+0.2
1,896,133	-		PP_1700	0.69	-2.0
1,896,133	-		PP_1700	0.69	-0.6
1,896,135	-		PP_1700	0.69	-0.2
1,896,135	-		PP_1700	0.69	+0.2
1,896,199	-		PP_1700	0.72	-0.2
1,896,303	-		PP_1700	0.77	-0.2
1,896,330	+		PP_1700	0.79	-0.0
1,896,333	+		PP_1700	0.79	-1.5
1,896,334	-		PP_1700	0.79	-2.1
1,896,334	-		PP_1700	0.79	-0.4
1,896,334	-		PP_1700	0.79	-1.1
1,896,334	-		PP_1700	0.79	+0.3
1,896,334	-		PP_1700	0.79	+2.4
1,896,342	+		PP_1700	0.79	+1.2
1,896,342	+		PP_1700	0.79	-1.1
1,896,342	+		PP_1700	0.79	-0.1
1,896,342	+		PP_1700	0.79	-0.5
1,896,342	+		PP_1700	0.79	+0.0
1,896,342	+		PP_1700	0.79	-1.7
1,896,343	-		PP_1700	0.79	-0.9
1,896,424	-		PP_1700	0.83	+0.4
1,896,424	-				+1.7
1,896,424	-		PP_1700	0.83	+0.1
1,896,424	-		PP_1700	0.83	-3.1
1,896,453	+		PP_1700	0.85	-1.0
1,896,518	-		PP_1700	0.88	-0.1
1,896,602	+				+0.4
1,896,603	-				+0.9
1,896,971	+		PP_1701	0.68	+0.2
1,897,286	-				+1.0
1,897,643	+				+3.0
1,897,643	+		PP_1702	0.38	-1.5
1,897,643	+		PP_1702	0.38	-1.2
1,897,643	+		PP_1702	0.38	+1.0
1,897,644	-				-1.9
1,897,644	-		PP_1702	0.38	-1.0
1,897,644	-		PP_1702	0.38	-1.9