Strain Fitness in Pseudomonas putida KT2440 around PP_1611

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
1,808,070	+		PP_1611	0.14	+0.2
1,808,070	+		PP_1611	0.14	-1.1
1,808,071	-		PP_1611	0.14	+1.2
1,808,071	-		PP_1611	0.14	+1.7
1,808,071	-		PP_1611	0.14	+0.4
1,808,071	-		PP_1611	0.14	+1.6
1,808,104	-		PP_1611	0.18	+1.5
1,808,154	+		PP_1611	0.24	-1.5
1,808,155	-		PP_1611	0.24	-0.9
1,808,155	-		PP_1611	0.24	+0.3
1,808,273	-		PP_1611	0.38	+1.1
1,808,273	-		PP_1611	0.38	-1.2
1,808,273	-		PP_1611	0.38	-0.4
1,808,440	+		PP_1611	0.58	+0.3
1,808,441	-		PP_1611	0.58	+1.0
1,808,441	-		PP_1611	0.58	+2.8
1,808,469	+		PP_1611	0.61	+0.8
1,808,717	+				+0.8
1,808,718	-				+3.1
1,808,782	+				+1.0
1,808,793	+				-1.9
1,808,908	+				+1.1
1,808,908	+				+0.4
1,808,913	+				+0.2
1,808,913	+				+0.7
1,808,913	+				-0.4