Strain Fitness in Pseudomonas putida KT2440 around PP_0918

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
1,060,003	+		PP_0917	0.17	-0.8
1,060,004	-		PP_0917	0.17	-1.1
1,060,045	+		PP_0917	0.21	-0.2
1,060,045	+		PP_0917	0.21	-3.2
1,060,046	-		PP_0917	0.21	-2.4
1,060,422	-		PP_0917	0.64	-1.1
1,060,467	+		PP_0917	0.69	-2.4
1,060,468	-		PP_0917	0.69	-1.4
1,060,486	+		PP_0917	0.71	-3.3
1,060,487	-		PP_0917	0.71	-0.4
1,060,654	-		PP_0917	0.90	-3.5
1,060,743	+				+1.3
1,060,743	+				-1.0
1,060,743	+				+0.3
1,060,743	+				+1.9
1,060,744	-				-0.4
1,060,744	-				+0.2
1,060,792	+				+0.9
1,060,792	+				+0.3
1,060,792	+				-0.0
1,060,793	-				-0.9
1,060,793	-				-0.6
1,060,793	-				+1.1
1,060,793	-				-1.8
1,061,047	+		PP_0918	0.25	-0.4
1,061,048	-		PP_0918	0.25	+0.7
1,061,105	+		PP_0918	0.31	-0.1
1,061,140	+		PP_0918	0.35	+1.7
1,061,141	-		PP_0918	0.35	+0.5
1,061,141	-		PP_0918	0.35	-0.1
1,061,207	-		PP_0918	0.41	+0.6
1,061,221	+		PP_0918	0.43	-0.7
1,061,221	+		PP_0918	0.43	+1.6
1,061,221	+		PP_0918	0.43	+0.5
1,061,222	-		PP_0918	0.43	+0.5
1,061,222	-		PP_0918	0.43	-0.1
1,061,317	-		PP_0918	0.53	+0.7
1,061,412	+		PP_0918	0.62	+1.3
1,061,426	+		PP_0918	0.64	-0.4
1,061,467	+		PP_0918	0.68	+0.1
1,061,467	+		PP_0918	0.68	+0.9
1,061,467	+		PP_0918	0.68	-0.5
1,061,474	+		PP_0918	0.68	+0.8
1,061,474	+		PP_0918	0.68	+0.3
1,061,474	+		PP_0918	0.68	+0.5
1,061,474	+		PP_0918	0.68	+0.2
1,061,474	+		PP_0918	0.68	+0.6
1,061,474	+		PP_0918	0.68	+0.8
1,061,474	+		PP_0918	0.68	-1.7
1,061,474	+		PP_0918	0.68	+0.9
1,061,475	-		PP_0918	0.68	+0.7
1,061,475	-		PP_0918	0.68	-0.4
1,061,475	-		PP_0918	0.68	-0.1
1,061,475	-		PP_0918	0.68	-1.6
1,061,475	-		PP_0918	0.68	+0.1
1,061,515	+		PP_0918	0.73	+0.0
1,061,515	+		PP_0918	0.73	+1.0
1,061,515	+		PP_0918	0.73	-0.5
1,061,515	+		PP_0918	0.73	+0.4
1,061,516	-		PP_0918	0.73	+1.2
1,061,563	+		PP_0918	0.77	+1.8
1,061,563	+		PP_0918	0.77	+0.7
1,061,563	+		PP_0918	0.77	+0.6
1,061,563	+		PP_0918	0.77	+0.9
1,061,564	-		PP_0918	0.77	+0.5
1,061,564	-		PP_0918	0.77	+0.3
1,061,564	-				-0.5
1,061,578	-		PP_0918	0.79	+0.6
1,061,613	-		PP_0918	0.82	+0.0
1,061,713	+				+1.2
1,061,714	-				+1.2
1,061,819	+				-1.2
1,061,820	-				+0.2
1,061,821	+				+0.2
1,061,821	+				+1.6
1,061,822	-				+0.8
1,061,822	-				-0.3
1,061,842	-				+0.2
1,061,856	+				+1.2
1,061,856	+				+0.6
1,061,857	-				-0.0
1,061,857	-				+0.3
1,061,866	+				-0.3
1,062,184	+				-0.0
1,062,207	+		PP_0919	0.40	-0.8
1,062,207	+		PP_0919	0.40	+1.4
1,062,208	-		PP_0919	0.40	+0.5
1,062,208	-		PP_0919	0.40	-1.0
1,062,208	-		PP_0919	0.40	-0.2
1,062,310	+		PP_0919	0.52	-0.1
1,062,667	+				+0.6
1,062,728	+				+0.2
1,062,728	+				+0.2