Strain Fitness in Pseudomonas putida KT2440 around PP_0904

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
1,043,500	-				+0.3
1,043,509	+				+0.4
1,043,576	+				+0.4
1,043,576	+				+0.5
1,043,577	-				+2.0
1,043,577	-				+0.1
1,043,577	-				+0.5
1,043,577	-				-0.2
1,043,614	+				-0.8
1,043,646	-				-0.2
1,043,646	-				+0.9
1,043,670	-				+1.1
1,043,773	-				-0.0
1,043,773	-		PP_0903	0.24	-1.3
1,043,972	-		PP_0903	0.53	+0.3
1,043,972	-		PP_0903	0.53	+0.2
1,044,058	+		PP_0903	0.66	-2.8
1,044,155	+		PP_0903	0.80	-2.8
1,044,156	-		PP_0903	0.80	+1.5
1,044,175	-		PP_0903	0.83	+0.6
1,044,251	+				+1.4
1,044,269	+				-0.9
1,044,269	+				+0.2
1,044,269	+				+1.2
1,044,269	+				+0.1
1,044,269	+				+0.9
1,044,270	-				+0.4
1,044,273	+				-0.9
1,044,273	+				+0.5
1,044,273	+				-3.2
1,044,273	+				+0.1
1,044,274	-				+0.3
1,044,274	-				+1.2
1,044,274	-				+1.7
1,044,274	-				+1.4
1,044,274	-				-0.2
1,044,274	-				-0.0
1,044,274	-				-0.1
1,044,281	-				+1.0
1,044,288	-				+1.0
1,044,303	+				+1.0
1,044,304	-				-0.2
1,044,371	-		PP_0904	0.11	+0.6
1,044,435	-		PP_0904	0.20	+0.7
1,044,457	+		PP_0904	0.23	+1.6
1,044,457	+		PP_0904	0.23	+0.0
1,044,457	+		PP_0904	0.23	-0.8
1,044,461	+		PP_0904	0.24	+0.5
1,044,461	+		PP_0904	0.24	+2.0
1,044,461	+		PP_0904	0.24	+1.4
1,044,462	-		PP_0904	0.24	+1.8
1,044,462	-		PP_0904	0.24	+0.0
1,044,462	-		PP_0904	0.24	+0.4
1,044,767	+		PP_0904	0.68	-0.4
1,044,768	-		PP_0904	0.68	+1.7
1,044,768	-		PP_0904	0.68	+0.9
1,044,780	+		PP_0904	0.69	+0.1
1,044,780	+		PP_0904	0.69	-0.3
1,044,781	-		PP_0904	0.70	+0.9
1,044,781	-		PP_0904	0.70	+1.2
1,044,781	-		PP_0904	0.70	+0.2
1,044,792	+		PP_0904	0.71	+1.1
1,044,793	-		PP_0904	0.71	+1.0
1,044,793	-		PP_0904	0.71	+1.0
1,044,900	+		PP_0904	0.86	-0.7
1,044,901	-		PP_0904	0.87	+1.9
1,044,901	-		PP_0904	0.87	+1.6
1,044,993	-				-0.7
1,045,028	+		PP_0905	0.15	+0.4
1,045,029	-		PP_0905	0.15	+0.4
1,045,237	+				-0.0
1,045,237	+				+1.2
1,045,382	+				-0.5
1,045,382	+				-0.4
1,045,382	+				+1.7
1,045,407	+				-1.4
1,045,408	-				-1.0
1,045,408	-				+1.0
1,045,447	-				-2.2
1,045,603	+				-0.6
1,045,647	+		PP_0906	0.10	+1.3
1,045,647	+		PP_0906	0.10	-0.0
1,045,682	+		PP_0906	0.11	-0.1
1,045,682	+		PP_0906	0.11	+0.6
1,045,683	-		PP_0906	0.11	-0.7
1,045,683	-		PP_0906	0.11	+0.3
1,045,799	-		PP_0906	0.15	-0.6
1,045,858	+		PP_0906	0.17	-3.1
1,045,858	+		PP_0906	0.17	+0.0
1,045,859	-		PP_0906	0.17	+0.6
1,045,859	-		PP_0906	0.17	+0.9
1,045,859	-		PP_0906	0.17	-0.2
1,045,859	-		PP_0906	0.17	-3.6
1,045,859	-		PP_0906	0.17	-0.3
1,045,859	-		PP_0906	0.17	-0.4
1,045,862	+		PP_0906	0.17	-1.2
1,045,862	+		PP_0906	0.17	+0.4
1,045,862	+				+1.7
1,045,862	+		PP_0906	0.17	+0.1
1,045,862	+		PP_0906	0.17	-0.8
1,045,863	-		PP_0906	0.17	+0.1
1,045,863	-		PP_0906	0.17	+0.9
1,045,863	-		PP_0906	0.17	-0.2
1,045,883	+		PP_0906	0.18	-0.2
1,045,883	+		PP_0906	0.18	-3.4