Strain Fitness in Pseudomonas putida KT2440 around PP_0889

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
1,030,925	-		PP_0887	0.73	-2.5
1,030,995	-		PP_0887	0.78	-1.3
1,031,083	-		PP_0887	0.84	-2.1
1,031,142	+		PP_0887	0.89	+0.6
1,031,142	+		PP_0887	0.89	+0.3
1,031,142	+		PP_0887	0.89	+1.4
1,031,142	+		PP_0887	0.89	-0.4
1,031,142	+		PP_0887	0.89	+1.2
1,031,143	-		PP_0887	0.89	-2.7
1,031,145	+		PP_0887	0.89	-0.3
1,031,145	+		PP_0887	0.89	+1.4
1,031,146	-		PP_0887	0.89	-0.3
1,031,227	+				+2.6
1,031,228	-				-2.3
1,031,228	-				-1.5
1,031,228	-				-0.9
1,031,229	+				-1.8
1,031,229	+				+1.6
1,031,229	+				+0.5
1,031,273	-				-2.6
1,031,273	-				-0.2
1,031,470	-		PP_0888	0.31	-2.5
1,031,622	+		PP_0888	0.58	-2.0
1,031,622	+		PP_0888	0.58	-2.2
1,031,623	-		PP_0888	0.58	-0.9
1,031,774	+		PP_0888	0.85	-0.5
1,031,775	-		PP_0888	0.86	-0.5
1,031,971	+				+0.8
1,031,971	+				+1.1
1,031,972	-				+0.2
1,031,972	-				+0.2
1,031,972	-				-0.6
1,032,158	+		PP_0889	0.22	-2.2
1,032,159	-		PP_0889	0.22	+0.4
1,032,159	-		PP_0889	0.22	+0.4
1,032,175	-		PP_0889	0.24	+0.4
1,032,221	-		PP_0889	0.28	+0.0
1,032,233	-		PP_0889	0.29	+1.8
1,032,303	+		PP_0889	0.35	+1.3
1,032,303	+		PP_0889	0.35	-2.4
1,032,304	-		PP_0889	0.35	-2.2
1,032,304	-		PP_0889	0.35	-1.8
1,032,304	-		PP_0889	0.35	-0.3
1,032,304	-		PP_0889	0.35	-3.2
1,032,384	+		PP_0889	0.42	-0.3
1,032,384	+		PP_0889	0.42	+0.7
1,032,390	+		PP_0889	0.42	+0.7
1,032,390	+		PP_0889	0.42	-0.5
1,032,426	+		PP_0889	0.46	+0.4
1,032,426	+		PP_0889	0.46	-0.2
1,032,429	-		PP_0889	0.46	+1.3
1,032,505	-		PP_0889	0.53	-3.1
1,032,505	-		PP_0889	0.53	+0.2
1,032,577	-		PP_0889	0.59	-0.8
1,032,648	+		PP_0889	0.65	-1.0
1,032,648	+		PP_0889	0.65	+0.3
1,032,648	+		PP_0889	0.65	-0.4
1,032,648	+		PP_0889	0.65	-0.0
1,032,648	+		PP_0889	0.65	+0.3
1,032,648	+		PP_0889	0.65	+0.4
1,032,648	+		PP_0889	0.65	+0.1
1,032,649	-		PP_0889	0.65	+0.7
1,032,649	-		PP_0889	0.65	-1.5
1,032,649	-		PP_0889	0.65	-0.7
1,032,649	-		PP_0889	0.65	-0.0
1,032,652	+		PP_0889	0.66	-0.5
1,032,652	+		PP_0889	0.66	-0.8
1,032,652	+		PP_0889	0.66	+0.5
1,032,653	-		PP_0889	0.66	-1.9
1,032,653	-		PP_0889	0.66	-0.8
1,032,664	-		PP_0889	0.67	-1.2
1,032,664	-		PP_0889	0.67	+0.8
1,032,669	+		PP_0889	0.67	-0.1
1,032,695	+		PP_0889	0.69	-1.7
1,032,695	+		PP_0889	0.69	+0.9
1,032,760	+		PP_0889	0.75	+0.2
1,032,761	-		PP_0889	0.75	+0.7
1,032,761	-		PP_0889	0.75	+0.3
1,032,922	+		PP_0889	0.89	-2.7
1,032,922	+		PP_0889	0.89	+1.2
1,032,922	+		PP_0889	0.89	-0.3
1,032,922	+		PP_0889	0.89	+0.3
1,032,922	+		PP_0889	0.89	-0.0
1,032,922	+		PP_0889	0.89	+0.3
1,032,923	-		PP_0889	0.89	+0.4
1,032,923	-		PP_0889	0.89	+0.7
1,032,923	-		PP_0889	0.89	+1.2
1,032,923	-		PP_0889	0.89	+2.0
1,032,923	-		PP_0889	0.89	-0.5
1,032,923	-		PP_0889	0.89	-4.1
1,032,924	+		PP_0889	0.89	-0.6
1,032,924	+		PP_0889	0.89	-0.3
1,032,924	+		PP_0889	0.89	+1.3
1,032,924	+		PP_0889	0.89	-0.1
1,032,924	+		PP_0889	0.89	+0.1
1,032,925	-		PP_0889	0.90	-0.1
1,032,925	-				+0.3
1,032,925	-		PP_0889	0.90	-1.7
1,032,925	-		PP_0889	0.90	+1.0
1,032,925	-		PP_0889	0.90	+0.2
1,032,984	+				+0.9
1,032,984	+				+1.0
1,032,985	-				+0.4
1,033,079	+		PP_0890	0.13	-2.0
1,033,125	+		PP_0890	0.29	+0.5
1,033,125	+		PP_0890	0.29	+0.7
1,033,126	-		PP_0890	0.29	-2.0
1,033,151	+		PP_0890	0.37	-0.3
1,033,151	+		PP_0890	0.37	+0.4
1,033,151	+		PP_0890	0.37	+0.9
1,033,152	-		PP_0890	0.38	-0.8
1,033,152	-		PP_0890	0.38	+0.2
1,033,152	-		PP_0890	0.38	+0.1
1,033,190	+		PP_0890	0.51	+0.4
1,033,191	-		PP_0890	0.51	-1.2
1,033,191	-		PP_0890	0.51	+0.0
1,033,202	+		PP_0890	0.55	+0.6
1,033,203	-		PP_0890	0.55	+0.4
1,033,349	-				-1.6
1,033,412	+				-0.7
1,033,413	-				-0.3
1,033,557	+		PP_0891	0.30	+0.5
1,033,771	+		PP_0891	0.67	-2.8
1,033,771	+		PP_0891	0.67	-0.3
1,033,771	+		PP_0891	0.67	-0.7
1,033,772	-		PP_0891	0.67	+0.7
1,033,772	-		PP_0891	0.67	-2.0
1,033,772	-		PP_0891	0.67	-3.1
1,033,772	-		PP_0891	0.67	-0.2