Strain Fitness in Pseudomonas putida KT2440 around PP_0851

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0850 and PP_0851 are separated by 8 nucleotidesPP_0851 and PP_0852 overlap by 4 nucleotides PP_0850: PP_0850 - Dual-specificity RNA methyltransferase RlmN, at 984,085 to 985,230 _0850 PP_0851: PP_0851 - Type IV pili biogenesis protein PilF, at 985,239 to 986,006 _0851 PP_0852: PP_0852 - Transcriptional regulator, Cro/CI family, at 986,003 to 987,010 _0852 Position (kb) 985 986 987Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 984.242 kb on + strand, within PP_0850at 984.242 kb on + strand, within PP_0850at 984.242 kb on + strand, within PP_0850at 984.243 kb on - strand, within PP_0850at 984.243 kb on - strand, within PP_0850at 984.333 kb on + strand, within PP_0850at 984.333 kb on + strand, within PP_0850at 984.334 kb on - strand, within PP_0850at 984.379 kb on + strand, within PP_0850at 984.379 kb on + strand, within PP_0850at 984.380 kb on - strand, within PP_0850at 984.380 kb on - strand, within PP_0850at 984.847 kb on + strand, within PP_0850at 984.847 kb on + strand, within PP_0850at 984.848 kb on - strand, within PP_0850at 984.848 kb on - strand, within PP_0850at 984.889 kb on + strand, within PP_0850at 984.889 kb on + strand, within PP_0850at 984.943 kb on + strand, within PP_0850at 984.959 kb on + strand, within PP_0850at 985.086 kb on + strand, within PP_0850at 985.149 kb on + strandat 985.168 kb on + strandat 985.169 kb on - strandat 985.169 kb on - strandat 985.169 kb on - strandat 985.235 kb on + strandat 985.236 kb on - strandat 985.236 kb on - strandat 985.362 kb on + strand, within PP_0851at 985.362 kb on + strand, within PP_0851at 985.362 kb on + strand, within PP_0851at 985.363 kb on - strand, within PP_0851at 985.363 kb on - strand, within PP_0851at 985.363 kb on - strand, within PP_0851at 985.384 kb on - strand, within PP_0851at 985.543 kb on + strand, within PP_0851at 985.543 kb on + strand, within PP_0851at 985.543 kb on + strand, within PP_0851at 985.544 kb on - strand, within PP_0851at 985.576 kb on - strand, within PP_0851at 985.591 kb on - strand, within PP_0851at 985.653 kb on + strand, within PP_0851at 985.731 kb on + strand, within PP_0851at 985.731 kb on + strand, within PP_0851at 985.731 kb on + strand, within PP_0851at 985.815 kb on + strand, within PP_0851at 985.815 kb on + strand, within PP_0851at 985.815 kb on + strand, within PP_0851at 985.815 kb on + strand, within PP_0851at 985.815 kb on + strand, within PP_0851at 985.815 kb on + strand, within PP_0851at 985.815 kb on + strand, within PP_0851at 985.815 kb on + strand, within PP_0851at 985.815 kb on + strand, within PP_0851at 985.815 kb on + strand, within PP_0851at 985.833 kb on + strand, within PP_0851at 985.833 kb on + strand, within PP_0851at 985.833 kb on + strand, within PP_0851at 985.836 kb on + strand, within PP_0851at 985.836 kb on + strand, within PP_0851at 985.836 kb on + strand, within PP_0851at 985.836 kb on + strand, within PP_0851at 985.836 kb on + strand, within PP_0851at 985.948 kb on + strandat 985.959 kb on + strandat 985.986 kb on + strandat 985.986 kb on + strandat 986.025 kb on + strandat 986.025 kb on + strandat 986.110 kb on + strand, within PP_0852at 986.110 kb on + strand, within PP_0852at 986.179 kb on + strand, within PP_0852at 986.195 kb on + strand, within PP_0852at 986.244 kb on + strand, within PP_0852at 986.244 kb on + strand, within PP_0852at 986.338 kb on + strand, within PP_0852at 986.338 kb on + strand, within PP_0852at 986.939 kb on + strandat 986.939 kb on + strandat 986.939 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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984,242 + PP_0850 0.14 +0.0
984,242 + PP_0850 0.14 -1.5
984,242 + PP_0850 0.14 +0.9
984,243 - PP_0850 0.14 -1.6
984,243 - PP_0850 0.14 -0.8
984,333 + PP_0850 0.22 -0.5
984,333 + PP_0850 0.22 -1.0
984,334 - PP_0850 0.22 +0.0
984,379 + PP_0850 0.26 -2.7
984,379 + PP_0850 0.26 +0.4
984,380 - PP_0850 0.26 -0.4
984,380 - PP_0850 0.26 +0.1
984,847 + PP_0850 0.66 -3.5
984,847 + PP_0850 0.66 -2.7
984,848 - PP_0850 0.67 -2.7
984,848 - PP_0850 0.67 -1.7
984,889 + PP_0850 0.70 -0.8
984,889 + PP_0850 0.70 -3.6
984,943 + PP_0850 0.75 -2.6
984,959 + PP_0850 0.76 -1.3
985,086 + PP_0850 0.87 -0.6
985,149 + -0.6
985,168 + -0.3
985,169 - -1.0
985,169 - -3.3
985,169 - -2.0
985,235 + +0.9
985,236 - -3.5
985,236 - -2.2
985,362 + PP_0851 0.16 +1.2
985,362 + PP_0851 0.16 +0.6
985,362 + PP_0851 0.16 +2.1
985,363 - PP_0851 0.16 +0.2
985,363 - PP_0851 0.16 -2.3
985,363 - PP_0851 0.16 -2.4
985,384 - PP_0851 0.19 +0.4
985,543 + PP_0851 0.40 +0.6
985,543 + PP_0851 0.40 +1.5
985,543 + PP_0851 0.40 -1.2
985,544 - PP_0851 0.40 -2.6
985,576 - PP_0851 0.44 +0.3
985,591 - PP_0851 0.46 -2.1
985,653 + PP_0851 0.54 +1.5
985,731 + PP_0851 0.64 +1.0
985,731 + PP_0851 0.64 +1.4
985,731 + PP_0851 0.64 +2.1
985,815 + PP_0851 0.75 -0.4
985,815 + PP_0851 0.75 +1.0
985,815 + PP_0851 0.75 +1.0
985,815 + PP_0851 0.75 +1.8
985,815 + PP_0851 0.75 +1.2
985,815 + PP_0851 0.75 +0.6
985,815 + PP_0851 0.75 +1.5
985,815 + PP_0851 0.75 +0.7
985,815 + PP_0851 0.75 +1.3
985,815 + PP_0851 0.75 -0.1
985,833 + PP_0851 0.77 +1.5
985,833 + PP_0851 0.77 +1.2
985,833 + PP_0851 0.77 +2.2
985,836 + PP_0851 0.78 +0.9
985,836 + PP_0851 0.78 +0.7
985,836 + PP_0851 0.78 +1.2
985,836 + PP_0851 0.78 +1.2
985,836 + PP_0851 0.78 +0.8
985,948 + +1.1
985,959 + +0.5
985,986 + -0.6
985,986 + -2.6
986,025 + -1.6
986,025 + -3.3
986,110 + PP_0852 0.11 -2.8
986,110 + PP_0852 0.11 -2.5
986,179 + PP_0852 0.17 -3.3
986,195 + PP_0852 0.19 -2.6
986,244 + PP_0852 0.24 -1.7
986,244 + PP_0852 0.24 -3.2
986,338 + PP_0852 0.33 -3.6
986,338 + PP_0852 0.33 -1.5
986,939 + -1.5
986,939 + -3.7
986,939 + -3.8

Or see this region's nucleotide sequence