Strain Fitness in Pseudomonas putida KT2440 around PP_0562

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0561 and PP_0562 are separated by 117 nucleotidesPP_0562 and PP_0563 are separated by 244 nucleotides PP_0561: PP_0561 - thiol/disulfide interchange protein 1, at 650,891 to 652,663 _0561 PP_0562: PP_0562 - Methyl-accepting chemotaxis protein CtpL, at 652,781 to 654,742 _0562 PP_0563: PP_0563 - Response regulator, at 654,987 to 656,342 _0563 Position (kb) 652 653 654 655Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 651.911 kb on + strand, within PP_0561at 651.932 kb on + strand, within PP_0561at 652.017 kb on + strand, within PP_0561at 652.017 kb on + strand, within PP_0561at 652.214 kb on - strand, within PP_0561at 652.214 kb on - strandat 652.214 kb on - strand, within PP_0561at 652.303 kb on + strand, within PP_0561at 652.303 kb on + strand, within PP_0561at 652.304 kb on - strand, within PP_0561at 652.335 kb on + strand, within PP_0561at 652.335 kb on + strand, within PP_0561at 652.336 kb on - strand, within PP_0561at 652.336 kb on - strand, within PP_0561at 652.336 kb on - strand, within PP_0561at 652.408 kb on + strand, within PP_0561at 652.452 kb on + strand, within PP_0561at 652.452 kb on + strand, within PP_0561at 652.452 kb on + strand, within PP_0561at 652.452 kb on + strand, within PP_0561at 652.452 kb on + strand, within PP_0561at 652.455 kb on + strandat 652.455 kb on + strand, within PP_0561at 652.455 kb on + strand, within PP_0561at 652.455 kb on + strand, within PP_0561at 652.533 kb on - strandat 652.634 kb on + strandat 652.716 kb on - strandat 652.716 kb on - strandat 652.735 kb on + strandat 652.736 kb on - strandat 652.736 kb on - strandat 652.736 kb on - strandat 652.747 kb on + strandat 652.850 kb on - strandat 653.286 kb on - strand, within PP_0562at 653.602 kb on + strand, within PP_0562at 653.603 kb on - strand, within PP_0562at 653.603 kb on - strand, within PP_0562at 653.603 kb on - strand, within PP_0562at 653.634 kb on + strand, within PP_0562at 653.876 kb on + strand, within PP_0562at 653.909 kb on + strand, within PP_0562at 653.910 kb on - strand, within PP_0562at 653.910 kb on - strand, within PP_0562at 654.272 kb on + strand, within PP_0562at 654.272 kb on + strand, within PP_0562at 654.273 kb on - strand, within PP_0562at 654.273 kb on - strand, within PP_0562at 654.273 kb on - strand, within PP_0562at 654.289 kb on - strand, within PP_0562at 654.324 kb on + strand, within PP_0562at 654.325 kb on - strand, within PP_0562at 654.564 kb on + strandat 654.565 kb on - strandat 654.565 kb on - strandat 654.575 kb on - strandat 654.618 kb on + strandat 654.619 kb on - strandat 654.742 kb on + strandat 654.772 kb on + strandat 654.772 kb on + strandat 654.773 kb on - strandat 654.773 kb on - strandat 654.908 kb on + strandat 654.908 kb on + strandat 654.909 kb on - strandat 654.925 kb on + strandat 654.926 kb on - strandat 654.926 kb on - strandat 654.926 kb on - strandat 654.997 kb on - strandat 655.145 kb on - strand, within PP_0563at 655.436 kb on + strand, within PP_0563at 655.437 kb on - strand, within PP_0563at 655.450 kb on + strand, within PP_0563at 655.451 kb on - strand, within PP_0563at 655.523 kb on + strand, within PP_0563at 655.523 kb on + strand, within PP_0563at 655.624 kb on + strand, within PP_0563at 655.625 kb on - strand, within PP_0563at 655.625 kb on - strand, within PP_0563at 655.625 kb on - strand, within PP_0563at 655.645 kb on + strand, within PP_0563at 655.645 kb on + strand, within PP_0563at 655.645 kb on + strand, within PP_0563at 655.646 kb on - strand, within PP_0563at 655.646 kb on - strand, within PP_0563at 655.666 kb on - strand, within PP_0563at 655.702 kb on + strand, within PP_0563at 655.703 kb on - strand, within PP_0563at 655.703 kb on - strand, within PP_0563at 655.703 kb on - strand, within PP_0563at 655.703 kb on - strand, within PP_0563at 655.703 kb on - strand, within PP_0563

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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651,911 + PP_0561 0.58 +0.2
651,932 + PP_0561 0.59 -0.2
652,017 + PP_0561 0.64 +0.5
652,017 + PP_0561 0.64 +0.7
652,214 - PP_0561 0.75 +0.1
652,214 - -0.9
652,214 - PP_0561 0.75 -1.0
652,303 + PP_0561 0.80 +0.1
652,303 + PP_0561 0.80 +2.0
652,304 - PP_0561 0.80 +0.4
652,335 + PP_0561 0.81 -0.9
652,335 + PP_0561 0.81 -0.1
652,336 - PP_0561 0.82 +1.0
652,336 - PP_0561 0.82 -1.2
652,336 - PP_0561 0.82 +1.2
652,408 + PP_0561 0.86 -2.0
652,452 + PP_0561 0.88 +0.5
652,452 + PP_0561 0.88 -0.1
652,452 + PP_0561 0.88 -1.1
652,452 + PP_0561 0.88 -0.8
652,452 + PP_0561 0.88 +1.0
652,455 + +0.7
652,455 + PP_0561 0.88 -3.1
652,455 + PP_0561 0.88 -0.3
652,455 + PP_0561 0.88 +0.6
652,533 - -0.7
652,634 + -0.1
652,716 - +0.9
652,716 - -0.5
652,735 + +1.4
652,736 - -0.9
652,736 - +0.2
652,736 - +0.9
652,747 + +0.1
652,850 - +0.7
653,286 - PP_0562 0.26 -1.2
653,602 + PP_0562 0.42 -3.5
653,603 - PP_0562 0.42 -0.2
653,603 - PP_0562 0.42 +0.9
653,603 - PP_0562 0.42 +0.7
653,634 + PP_0562 0.43 -2.9
653,876 + PP_0562 0.56 -0.5
653,909 + PP_0562 0.57 +0.1
653,910 - PP_0562 0.58 -1.1
653,910 - PP_0562 0.58 -0.9
654,272 + PP_0562 0.76 -0.7
654,272 + PP_0562 0.76 +3.2
654,273 - PP_0562 0.76 -0.5
654,273 - PP_0562 0.76 -1.1
654,273 - PP_0562 0.76 +0.8
654,289 - PP_0562 0.77 -0.7
654,324 + PP_0562 0.79 -0.4
654,325 - PP_0562 0.79 -3.5
654,564 + -3.2
654,565 - -3.7
654,565 - -0.3
654,575 - +0.6
654,618 + +0.4
654,619 - -1.6
654,742 + -2.9
654,772 + -2.0
654,772 + -0.7
654,773 - -0.2
654,773 - -0.6
654,908 + -0.4
654,908 + +1.1
654,909 - -0.4
654,925 + +1.3
654,926 - -1.9
654,926 - +0.7
654,926 - +0.8
654,997 - -0.2
655,145 - PP_0563 0.12 +0.1
655,436 + PP_0563 0.33 -0.3
655,437 - PP_0563 0.33 -0.4
655,450 + PP_0563 0.34 -0.3
655,451 - PP_0563 0.34 +1.4
655,523 + PP_0563 0.40 +0.1
655,523 + PP_0563 0.40 -1.7
655,624 + PP_0563 0.47 -0.9
655,625 - PP_0563 0.47 +1.1
655,625 - PP_0563 0.47 +0.4
655,625 - PP_0563 0.47 +0.2
655,645 + PP_0563 0.49 -0.2
655,645 + PP_0563 0.49 +0.0
655,645 + PP_0563 0.49 -1.0
655,646 - PP_0563 0.49 +0.3
655,646 - PP_0563 0.49 -0.1
655,666 - PP_0563 0.50 -1.2
655,702 + PP_0563 0.53 -0.8
655,703 - PP_0563 0.53 -1.8
655,703 - PP_0563 0.53 +0.2
655,703 - PP_0563 0.53 +0.6
655,703 - PP_0563 0.53 -0.5
655,703 - PP_0563 0.53 +0.2

Or see this region's nucleotide sequence