Strain Fitness in Pseudomonas putida KT2440 around PP_0520

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0518 and PP_0519 are separated by 18 nucleotidesPP_0519 and PP_0520 overlap by 4 nucleotidesPP_0520 and PP_0521 are separated by 16 nucleotidesPP_0521 and PP_0522 are separated by 180 nucleotides PP_0518: PP_0518 - transcription antitermination protein, at 604,169 to 604,669 _0518 PP_0519: PP_0519 - thiamin monophosphate kinase, at 604,688 to 605,656 _0519 PP_0520: PP_0520 - phosphatidylglycerophosphatase A, at 605,653 to 606,156 _0520 PP_0521: PP_0521 - conserved exported protein of unknown function, at 606,173 to 606,916 _0521 PP_0522: PP_0522 - GTP cyclohydrolase-2, at 607,097 to 607,714 _0522 Position (kb) 605 606 607Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 605.641 kb on + strandat 605.834 kb on - strand, within PP_0520at 605.906 kb on + strand, within PP_0520at 605.906 kb on + strand, within PP_0520at 606.180 kb on + strandat 606.181 kb on - strandat 606.189 kb on + strandat 606.189 kb on + strandat 606.189 kb on + strandat 606.189 kb on + strandat 606.190 kb on - strandat 606.190 kb on - strandat 606.211 kb on + strandat 606.211 kb on + strandat 606.212 kb on - strandat 606.212 kb on - strandat 606.284 kb on + strand, within PP_0521at 606.284 kb on + strand, within PP_0521at 606.284 kb on + strand, within PP_0521at 606.285 kb on - strand, within PP_0521at 606.434 kb on + strand, within PP_0521at 606.435 kb on - strand, within PP_0521at 606.462 kb on - strand, within PP_0521at 606.490 kb on + strand, within PP_0521at 606.490 kb on + strand, within PP_0521at 606.490 kb on + strand, within PP_0521at 606.490 kb on + strand, within PP_0521at 606.490 kb on + strand, within PP_0521at 606.490 kb on + strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.494 kb on + strand, within PP_0521at 606.494 kb on + strand, within PP_0521at 606.494 kb on + strand, within PP_0521at 606.494 kb on + strand, within PP_0521at 606.494 kb on + strand, within PP_0521at 606.494 kb on + strand, within PP_0521at 606.494 kb on + strand, within PP_0521at 606.495 kb on - strand, within PP_0521at 606.495 kb on - strand, within PP_0521at 606.495 kb on - strand, within PP_0521at 606.495 kb on - strand, within PP_0521at 606.495 kb on - strand, within PP_0521at 606.495 kb on - strand, within PP_0521at 606.526 kb on + strand, within PP_0521at 606.548 kb on + strand, within PP_0521at 606.572 kb on + strand, within PP_0521at 606.587 kb on + strand, within PP_0521at 606.587 kb on + strand, within PP_0521at 606.588 kb on - strand, within PP_0521at 606.588 kb on - strand, within PP_0521at 606.588 kb on - strand, within PP_0521at 606.588 kb on - strand, within PP_0521at 606.588 kb on - strand, within PP_0521at 606.668 kb on + strand, within PP_0521at 606.668 kb on + strand, within PP_0521at 606.668 kb on + strand, within PP_0521at 606.668 kb on + strand, within PP_0521at 606.669 kb on - strand, within PP_0521at 606.671 kb on + strand, within PP_0521at 606.671 kb on + strand, within PP_0521at 606.671 kb on + strand, within PP_0521at 606.671 kb on + strand, within PP_0521at 606.672 kb on - strand, within PP_0521at 606.672 kb on - strand, within PP_0521at 606.698 kb on + strand, within PP_0521at 606.698 kb on + strand, within PP_0521at 606.698 kb on + strand, within PP_0521at 606.699 kb on - strand, within PP_0521at 606.699 kb on - strand, within PP_0521at 606.764 kb on + strand, within PP_0521at 606.764 kb on + strand, within PP_0521at 606.765 kb on - strand, within PP_0521at 606.765 kb on - strand, within PP_0521at 606.765 kb on - strand, within PP_0521at 606.782 kb on - strand, within PP_0521at 606.837 kb on + strand, within PP_0521at 606.837 kb on + strand, within PP_0521at 606.837 kb on + strand, within PP_0521at 606.837 kb on + strand, within PP_0521at 606.838 kb on - strand, within PP_0521at 606.841 kb on + strand, within PP_0521at 606.884 kb on + strandat 606.924 kb on + strandat 606.925 kb on - strandat 606.934 kb on + strandat 606.934 kb on + strandat 606.934 kb on + strandat 606.934 kb on + strandat 606.934 kb on + strandat 606.934 kb on + strandat 606.934 kb on + strandat 606.935 kb on - strandat 606.935 kb on - strandat 606.935 kb on - strandat 606.936 kb on + strandat 606.937 kb on - strandat 606.983 kb on + strandat 606.986 kb on + strandat 606.986 kb on + strandat 606.987 kb on - strandat 607.008 kb on + strandat 607.018 kb on + strandat 607.018 kb on + strandat 607.020 kb on + strandat 607.020 kb on + strandat 607.020 kb on + strandat 607.020 kb on + strandat 607.020 kb on + strandat 607.020 kb on + strandat 607.020 kb on + strandat 607.021 kb on - strandat 607.051 kb on + strandat 607.080 kb on + strandat 607.080 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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605,641 + -1.9
605,834 - PP_0520 0.36 +1.6
605,906 + PP_0520 0.50 -1.9
605,906 + PP_0520 0.50 +3.0
606,180 + -2.1
606,181 - +0.4
606,189 + -0.9
606,189 + +0.3
606,189 + -1.5
606,189 + -0.5
606,190 - +0.6
606,190 - +1.2
606,211 + +1.1
606,211 + +0.3
606,212 - -0.0
606,212 - -0.1
606,284 + PP_0521 0.15 +1.1
606,284 + PP_0521 0.15 -0.9
606,284 + PP_0521 0.15 +0.3
606,285 - PP_0521 0.15 +1.4
606,434 + PP_0521 0.35 +0.4
606,435 - PP_0521 0.35 +0.5
606,462 - PP_0521 0.39 +0.5
606,490 + PP_0521 0.43 -0.0
606,490 + PP_0521 0.43 -1.9
606,490 + PP_0521 0.43 -0.9
606,490 + PP_0521 0.43 +2.2
606,490 + PP_0521 0.43 +2.1
606,490 + PP_0521 0.43 +0.7
606,491 - PP_0521 0.43 -0.4
606,491 - PP_0521 0.43 +0.9
606,491 - PP_0521 0.43 +0.5
606,491 - PP_0521 0.43 +0.7
606,491 - PP_0521 0.43 +0.8
606,491 - PP_0521 0.43 -0.9
606,491 - PP_0521 0.43 +0.1
606,491 - PP_0521 0.43 -1.9
606,491 - PP_0521 0.43 -0.5
606,491 - PP_0521 0.43 +0.1
606,491 - PP_0521 0.43 +0.4
606,491 - PP_0521 0.43 -0.1
606,491 - PP_0521 0.43 +0.9
606,491 - PP_0521 0.43 -2.5
606,491 - PP_0521 0.43 -0.6
606,491 - PP_0521 0.43 +1.8
606,491 - PP_0521 0.43 +0.2
606,494 + PP_0521 0.43 +0.6
606,494 + PP_0521 0.43 +0.5
606,494 + PP_0521 0.43 -0.7
606,494 + PP_0521 0.43 -2.8
606,494 + PP_0521 0.43 -1.7
606,494 + PP_0521 0.43 -1.4
606,494 + PP_0521 0.43 +0.6
606,495 - PP_0521 0.43 +0.6
606,495 - PP_0521 0.43 +0.0
606,495 - PP_0521 0.43 +1.6
606,495 - PP_0521 0.43 -1.6
606,495 - PP_0521 0.43 +0.4
606,495 - PP_0521 0.43 +0.4
606,526 + PP_0521 0.47 -1.1
606,548 + PP_0521 0.50 -0.1
606,572 + PP_0521 0.54 -1.0
606,587 + PP_0521 0.56 -2.7
606,587 + PP_0521 0.56 -0.8
606,588 - PP_0521 0.56 +0.5
606,588 - PP_0521 0.56 -2.2
606,588 - PP_0521 0.56 -0.4
606,588 - PP_0521 0.56 -0.0
606,588 - PP_0521 0.56 -0.2
606,668 + PP_0521 0.67 +0.2
606,668 + PP_0521 0.67 +1.7
606,668 + PP_0521 0.67 +1.1
606,668 + PP_0521 0.67 -0.7
606,669 - PP_0521 0.67 -0.3
606,671 + PP_0521 0.67 -0.6
606,671 + PP_0521 0.67 -1.1
606,671 + PP_0521 0.67 -0.8
606,671 + PP_0521 0.67 -1.2
606,672 - PP_0521 0.67 +1.4
606,672 - PP_0521 0.67 -1.5
606,698 + PP_0521 0.71 -2.0
606,698 + PP_0521 0.71 -0.5
606,698 + PP_0521 0.71 -1.9
606,699 - PP_0521 0.71 -0.8
606,699 - PP_0521 0.71 -0.8
606,764 + PP_0521 0.79 +0.7
606,764 + PP_0521 0.79 +0.7
606,765 - PP_0521 0.80 +0.8
606,765 - PP_0521 0.80 -1.4
606,765 - PP_0521 0.80 +1.7
606,782 - PP_0521 0.82 -0.0
606,837 + PP_0521 0.89 -0.9
606,837 + PP_0521 0.89 -0.4
606,837 + PP_0521 0.89 -1.8
606,837 + PP_0521 0.89 +0.1
606,838 - PP_0521 0.89 -0.1
606,841 + PP_0521 0.90 +0.7
606,884 + -1.0
606,924 + +1.3
606,925 - -1.0
606,934 + +0.1
606,934 + +0.2
606,934 + +0.2
606,934 + +0.6
606,934 + +0.6
606,934 + +0.1
606,934 + -0.2
606,935 - +1.2
606,935 - -1.3
606,935 - -2.2
606,936 + -0.8
606,937 - -1.5
606,983 + -2.2
606,986 + +0.6
606,986 + +0.1
606,987 - +0.0
607,008 + -0.4
607,018 + -0.6
607,018 + +0.5
607,020 + -0.3
607,020 + +0.5
607,020 + +0.1
607,020 + +0.2
607,020 + -0.3
607,020 + -0.9
607,020 + -0.1
607,021 - +0.8
607,051 + +0.7
607,080 + +0.7
607,080 + +0.1

Or see this region's nucleotide sequence