Strain Fitness in Pseudomonas putida KT2440 around PP_0326

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0325 and PP_0326 are separated by 74 nucleotidesPP_0326 and PP_0327 are separated by 11 nucleotides PP_0325: PP_0325 - sarcosine oxidase subunit alpha, at 389,727 to 392,741 _0325 PP_0326: PP_0326 - sarcosine oxidase subunit gamma, at 392,816 to 393,448 _0326 PP_0327: PP_0327 - formyltetrahydrofolate deformylase, at 393,460 to 394,317 _0327 Position (kb) 392 393 394Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 391.945 kb on + strand, within PP_0325at 391.946 kb on - strand, within PP_0325at 391.946 kb on - strand, within PP_0325at 391.965 kb on + strand, within PP_0325at 391.965 kb on + strand, within PP_0325at 391.966 kb on - strand, within PP_0325at 391.966 kb on - strand, within PP_0325at 391.998 kb on + strand, within PP_0325at 391.998 kb on + strand, within PP_0325at 391.998 kb on + strand, within PP_0325at 391.998 kb on + strand, within PP_0325at 391.998 kb on + strand, within PP_0325at 391.999 kb on - strand, within PP_0325at 392.162 kb on + strand, within PP_0325at 392.162 kb on + strand, within PP_0325at 392.162 kb on + strand, within PP_0325at 392.162 kb on + strand, within PP_0325at 392.163 kb on - strand, within PP_0325at 392.163 kb on - strand, within PP_0325at 392.187 kb on + strand, within PP_0325at 392.188 kb on - strand, within PP_0325at 392.188 kb on - strand, within PP_0325at 392.211 kb on + strand, within PP_0325at 392.211 kb on + strand, within PP_0325at 392.211 kb on + strand, within PP_0325at 392.211 kb on + strand, within PP_0325at 392.212 kb on - strand, within PP_0325at 392.212 kb on - strand, within PP_0325at 392.212 kb on - strand, within PP_0325at 392.256 kb on + strand, within PP_0325at 392.257 kb on - strand, within PP_0325at 392.293 kb on + strand, within PP_0325at 392.293 kb on + strand, within PP_0325at 392.293 kb on + strand, within PP_0325at 392.293 kb on + strand, within PP_0325at 392.293 kb on + strand, within PP_0325at 392.294 kb on - strand, within PP_0325at 392.574 kb on + strandat 392.575 kb on - strandat 392.596 kb on - strandat 392.740 kb on - strandat 392.811 kb on - strandat 392.905 kb on - strand, within PP_0326at 392.905 kb on - strand, within PP_0326at 393.260 kb on + strand, within PP_0326at 393.260 kb on + strand, within PP_0326at 393.261 kb on - strand, within PP_0326at 393.261 kb on - strand, within PP_0326at 393.261 kb on - strand, within PP_0326at 393.261 kb on - strand, within PP_0326at 393.446 kb on + strandat 393.446 kb on + strandat 393.446 kb on + strandat 393.446 kb on + strandat 393.447 kb on - strandat 393.539 kb on - strandat 393.539 kb on - strandat 393.560 kb on - strand, within PP_0327at 393.781 kb on + strand, within PP_0327at 393.877 kb on + strand, within PP_0327at 393.878 kb on - strand, within PP_0327at 393.880 kb on + strand, within PP_0327at 393.881 kb on - strand, within PP_0327at 393.979 kb on + strand, within PP_0327at 393.979 kb on + strand, within PP_0327at 393.980 kb on - strand, within PP_0327at 393.980 kb on - strand, within PP_0327at 393.981 kb on + strand, within PP_0327at 393.981 kb on + strand, within PP_0327at 393.981 kb on + strand, within PP_0327at 393.982 kb on - strand, within PP_0327at 393.982 kb on - strand, within PP_0327at 393.982 kb on - strand, within PP_0327at 393.989 kb on + strand, within PP_0327at 393.989 kb on + strand, within PP_0327at 394.036 kb on - strand, within PP_0327at 394.036 kb on - strand, within PP_0327at 394.079 kb on - strand, within PP_0327at 394.090 kb on + strand, within PP_0327at 394.129 kb on + strand, within PP_0327at 394.129 kb on + strand, within PP_0327at 394.129 kb on + strand, within PP_0327at 394.129 kb on + strand, within PP_0327at 394.129 kb on + strand, within PP_0327at 394.129 kb on + strand, within PP_0327at 394.129 kb on + strand, within PP_0327at 394.129 kb on + strand, within PP_0327at 394.130 kb on - strand, within PP_0327at 394.130 kb on - strand, within PP_0327at 394.130 kb on - strand, within PP_0327at 394.316 kb on - strandat 394.316 kb on - strandat 394.355 kb on + strandat 394.355 kb on + strandat 394.361 kb on + strandat 394.361 kb on + strandat 394.361 kb on + strandat 394.361 kb on + strandat 394.396 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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391,945 + PP_0325 0.74 -0.8
391,946 - PP_0325 0.74 -0.4
391,946 - PP_0325 0.74 -0.0
391,965 + PP_0325 0.74 -3.1
391,965 + PP_0325 0.74 -2.7
391,966 - PP_0325 0.74 -2.1
391,966 - PP_0325 0.74 -1.6
391,998 + PP_0325 0.75 -1.3
391,998 + PP_0325 0.75 +0.5
391,998 + PP_0325 0.75 -0.7
391,998 + PP_0325 0.75 -0.7
391,998 + PP_0325 0.75 -0.7
391,999 - PP_0325 0.75 +0.1
392,162 + PP_0325 0.81 -0.6
392,162 + PP_0325 0.81 +0.3
392,162 + PP_0325 0.81 -2.1
392,162 + PP_0325 0.81 -2.2
392,163 - PP_0325 0.81 -3.5
392,163 - PP_0325 0.81 +0.1
392,187 + PP_0325 0.82 -2.4
392,188 - PP_0325 0.82 +1.0
392,188 - PP_0325 0.82 -1.9
392,211 + PP_0325 0.82 -2.9
392,211 + PP_0325 0.82 -0.5
392,211 + PP_0325 0.82 -0.8
392,211 + PP_0325 0.82 +0.1
392,212 - PP_0325 0.82 -1.7
392,212 - PP_0325 0.82 -0.3
392,212 - PP_0325 0.82 -2.3
392,256 + PP_0325 0.84 -2.3
392,257 - PP_0325 0.84 -2.6
392,293 + PP_0325 0.85 -0.8
392,293 + PP_0325 0.85 -1.8
392,293 + PP_0325 0.85 -2.6
392,293 + PP_0325 0.85 -1.1
392,293 + PP_0325 0.85 -0.7
392,294 - PP_0325 0.85 +0.5
392,574 + -0.6
392,575 - -1.2
392,596 - -1.2
392,740 - -2.7
392,811 - -3.2
392,905 - PP_0326 0.14 -2.5
392,905 - PP_0326 0.14 -1.6
393,260 + PP_0326 0.70 -2.1
393,260 + PP_0326 0.70 -2.3
393,261 - PP_0326 0.70 -3.1
393,261 - PP_0326 0.70 -1.6
393,261 - PP_0326 0.70 -1.6
393,261 - PP_0326 0.70 -1.7
393,446 + -2.8
393,446 + -0.0
393,446 + -1.4
393,446 + -1.0
393,447 - +0.7
393,539 - +0.8
393,539 - -2.4
393,560 - PP_0327 0.12 +0.5
393,781 + PP_0327 0.37 -1.0
393,877 + PP_0327 0.49 +0.5
393,878 - PP_0327 0.49 -0.6
393,880 + PP_0327 0.49 -1.3
393,881 - PP_0327 0.49 +0.3
393,979 + PP_0327 0.60 -1.4
393,979 + PP_0327 0.60 -1.5
393,980 - PP_0327 0.61 -2.4
393,980 - PP_0327 0.61 +0.9
393,981 + PP_0327 0.61 +0.6
393,981 + PP_0327 0.61 +0.7
393,981 + PP_0327 0.61 -1.3
393,982 - PP_0327 0.61 +0.6
393,982 - PP_0327 0.61 +0.4
393,982 - PP_0327 0.61 -2.1
393,989 + PP_0327 0.62 -1.3
393,989 + PP_0327 0.62 +0.5
394,036 - PP_0327 0.67 -1.7
394,036 - PP_0327 0.67 -1.1
394,079 - PP_0327 0.72 -1.6
394,090 + PP_0327 0.73 -1.2
394,129 + PP_0327 0.78 -0.9
394,129 + PP_0327 0.78 +1.5
394,129 + PP_0327 0.78 -0.9
394,129 + PP_0327 0.78 -0.1
394,129 + PP_0327 0.78 +2.0
394,129 + PP_0327 0.78 +0.5
394,129 + PP_0327 0.78 -0.2
394,129 + PP_0327 0.78 -0.5
394,130 - PP_0327 0.78 +0.5
394,130 - PP_0327 0.78 +1.6
394,130 - PP_0327 0.78 -1.0
394,316 - -1.5
394,316 - +0.0
394,355 + -0.4
394,355 + -1.0
394,361 + +0.3
394,361 + -3.0
394,361 + +1.6
394,361 + -1.5
394,396 - +1.4

Or see this region's nucleotide sequence