Strain Fitness in Pseudomonas putida KT2440 around PP_0320

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0317 and PP_0318 are separated by 266 nucleotidesPP_0318 and PP_0319 overlap by 4 nucleotidesPP_0319 and PP_0320 are separated by 182 nucleotidesPP_0320 and PP_0321 are separated by 34 nucleotides PP_0317: PP_0317 - Methyl-accepting chemotaxis transducer, at 380,919 to 382,544 _0317 PP_0318: PP_0318 - conserved protein of unknown function, at 382,811 to 383,041 _0318 PP_0319: PP_0319 - conserved protein of unknown function, at 383,038 to 383,340 _0319 PP_0320: PP_0320 - Methyl-accepting chemotaxis transducer, at 383,523 to 385,460 _0320 PP_0321: PP_0321 - low specificity L-threonine aldolase, at 385,495 to 386,535 _0321 Position (kb) 383 384 385 386Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 382.523 kb on + strandat 382.704 kb on - strandat 382.732 kb on + strandat 382.733 kb on - strandat 382.747 kb on + strandat 382.747 kb on + strandat 382.756 kb on + strandat 382.804 kb on + strandat 382.805 kb on - strandat 383.223 kb on + strand, within PP_0319at 383.224 kb on - strand, within PP_0319at 383.338 kb on + strandat 383.339 kb on - strandat 383.463 kb on + strandat 383.502 kb on + strandat 383.503 kb on - strandat 383.503 kb on - strandat 383.516 kb on + strandat 383.516 kb on + strandat 383.516 kb on + strandat 383.528 kb on + strandat 383.528 kb on + strandat 383.528 kb on + strandat 383.528 kb on + strandat 383.528 kb on + strandat 383.528 kb on + strandat 383.528 kb on + strandat 383.529 kb on - strandat 383.529 kb on - strandat 383.529 kb on - strandat 383.529 kb on - strandat 383.529 kb on - strandat 383.537 kb on + strandat 383.538 kb on - strandat 383.609 kb on + strandat 383.748 kb on - strand, within PP_0320at 383.814 kb on + strand, within PP_0320at 383.849 kb on + strand, within PP_0320at 383.849 kb on + strand, within PP_0320at 383.849 kb on + strand, within PP_0320at 383.850 kb on - strand, within PP_0320at 383.852 kb on + strand, within PP_0320at 383.852 kb on + strand, within PP_0320at 383.853 kb on - strand, within PP_0320at 383.883 kb on + strand, within PP_0320at 383.883 kb on + strand, within PP_0320at 383.884 kb on - strand, within PP_0320at 383.884 kb on - strand, within PP_0320at 383.886 kb on + strand, within PP_0320at 383.886 kb on + strand, within PP_0320at 383.886 kb on + strand, within PP_0320at 383.887 kb on - strand, within PP_0320at 383.946 kb on + strand, within PP_0320at 383.946 kb on + strand, within PP_0320at 383.947 kb on - strand, within PP_0320at 384.031 kb on - strand, within PP_0320at 384.095 kb on - strand, within PP_0320at 384.269 kb on + strand, within PP_0320at 384.269 kb on + strand, within PP_0320at 384.270 kb on - strand, within PP_0320at 384.301 kb on - strand, within PP_0320at 384.638 kb on + strand, within PP_0320at 385.072 kb on + strand, within PP_0320at 385.072 kb on + strand, within PP_0320at 385.072 kb on + strand, within PP_0320at 385.072 kb on + strand, within PP_0320at 385.072 kb on + strand, within PP_0320at 385.072 kb on + strand, within PP_0320at 385.073 kb on - strand, within PP_0320at 385.073 kb on - strand, within PP_0320at 385.073 kb on - strand, within PP_0320at 385.073 kb on - strand, within PP_0320at 385.073 kb on - strand, within PP_0320at 385.073 kb on - strand, within PP_0320at 385.076 kb on + strand, within PP_0320at 385.076 kb on + strand, within PP_0320at 385.076 kb on + strand, within PP_0320at 385.076 kb on + strand, within PP_0320at 385.076 kb on + strand, within PP_0320at 385.076 kb on + strand, within PP_0320at 385.077 kb on - strand, within PP_0320at 385.077 kb on - strand, within PP_0320at 385.141 kb on + strand, within PP_0320at 385.141 kb on + strand, within PP_0320at 385.142 kb on - strand, within PP_0320at 385.142 kb on - strand, within PP_0320at 385.142 kb on - strand, within PP_0320at 385.231 kb on + strandat 385.459 kb on - strandat 385.459 kb on - strandat 385.599 kb on + strand, within PP_0321at 385.600 kb on - strand, within PP_0321at 385.601 kb on + strand, within PP_0321at 385.602 kb on - strand, within PP_0321at 385.602 kb on - strand, within PP_0321at 385.602 kb on - strand, within PP_0321at 385.602 kb on - strand, within PP_0321at 385.602 kb on - strand, within PP_0321at 385.762 kb on + strand, within PP_0321at 386.002 kb on - strand, within PP_0321at 386.002 kb on - strand, within PP_0321at 386.136 kb on - strand, within PP_0321at 386.143 kb on - strand, within PP_0321at 386.300 kb on + strand, within PP_0321at 386.300 kb on + strand, within PP_0321at 386.397 kb on - strand, within PP_0321at 386.432 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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382,523 + +0.1
382,704 - -1.4
382,732 + -0.8
382,733 - +1.6
382,747 + -0.7
382,747 + +0.2
382,756 + +0.3
382,804 + -1.5
382,805 - +0.9
383,223 + PP_0319 0.61 +2.7
383,224 - PP_0319 0.61 +0.9
383,338 + +0.8
383,339 - -3.5
383,463 + +1.1
383,502 + +0.8
383,503 - +0.9
383,503 - -0.3
383,516 + -0.1
383,516 + -0.1
383,516 + -2.5
383,528 + -0.0
383,528 + +0.8
383,528 + -0.6
383,528 + +0.3
383,528 + +1.7
383,528 + +0.5
383,528 + -0.8
383,529 - +0.7
383,529 - -3.0
383,529 - +0.1
383,529 - -1.1
383,529 - -0.5
383,537 + -0.4
383,538 - -1.8
383,609 + -0.1
383,748 - PP_0320 0.12 +0.2
383,814 + PP_0320 0.15 +0.9
383,849 + PP_0320 0.17 -1.0
383,849 + PP_0320 0.17 -0.3
383,849 + PP_0320 0.17 -0.5
383,850 - PP_0320 0.17 -1.5
383,852 + PP_0320 0.17 -2.3
383,852 + PP_0320 0.17 -0.3
383,853 - PP_0320 0.17 -0.5
383,883 + PP_0320 0.19 +0.1
383,883 + PP_0320 0.19 +0.7
383,884 - PP_0320 0.19 -3.8
383,884 - PP_0320 0.19 -1.7
383,886 + PP_0320 0.19 -0.2
383,886 + PP_0320 0.19 -2.8
383,886 + PP_0320 0.19 -2.5
383,887 - PP_0320 0.19 +0.7
383,946 + PP_0320 0.22 -1.2
383,946 + PP_0320 0.22 +0.4
383,947 - PP_0320 0.22 +0.6
384,031 - PP_0320 0.26 +0.8
384,095 - PP_0320 0.30 +0.6
384,269 + PP_0320 0.38 -0.1
384,269 + PP_0320 0.38 +1.4
384,270 - PP_0320 0.39 +1.1
384,301 - PP_0320 0.40 -0.1
384,638 + PP_0320 0.58 +0.4
385,072 + PP_0320 0.80 +3.5
385,072 + PP_0320 0.80 -1.0
385,072 + PP_0320 0.80 -2.9
385,072 + PP_0320 0.80 -0.2
385,072 + PP_0320 0.80 +0.2
385,072 + PP_0320 0.80 -0.3
385,073 - PP_0320 0.80 -0.9
385,073 - PP_0320 0.80 -1.4
385,073 - PP_0320 0.80 +0.1
385,073 - PP_0320 0.80 -1.2
385,073 - PP_0320 0.80 -1.1
385,073 - PP_0320 0.80 -0.4
385,076 + PP_0320 0.80 -0.9
385,076 + PP_0320 0.80 -0.7
385,076 + PP_0320 0.80 +0.9
385,076 + PP_0320 0.80 -0.4
385,076 + PP_0320 0.80 -3.8
385,076 + PP_0320 0.80 -0.6
385,077 - PP_0320 0.80 -0.9
385,077 - PP_0320 0.80 +0.7
385,141 + PP_0320 0.83 -1.1
385,141 + PP_0320 0.83 -0.1
385,142 - PP_0320 0.84 +0.9
385,142 - PP_0320 0.84 -0.9
385,142 - PP_0320 0.84 +1.6
385,231 + +0.4
385,459 - +0.2
385,459 - +0.2
385,599 + PP_0321 0.10 -3.1
385,600 - PP_0321 0.10 +0.7
385,601 + PP_0321 0.10 +1.0
385,602 - PP_0321 0.10 -4.0
385,602 - PP_0321 0.10 -1.1
385,602 - PP_0321 0.10 -1.0
385,602 - PP_0321 0.10 -3.2
385,602 - PP_0321 0.10 +0.5
385,762 + PP_0321 0.26 +0.4
386,002 - PP_0321 0.49 -1.8
386,002 - PP_0321 0.49 -2.3
386,136 - PP_0321 0.62 -0.7
386,143 - PP_0321 0.62 +0.3
386,300 + PP_0321 0.77 +0.4
386,300 + PP_0321 0.77 -1.1
386,397 - PP_0321 0.87 -0.5
386,432 + -2.8

Or see this region's nucleotide sequence