Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0317 and PP_0318 are separated by 266 nucleotides PP_0318 and PP_0319 overlap by 4 nucleotides PP_0319 and PP_0320 are separated by 182 nucleotides
PP_0317: PP_0317 - Methyl-accepting chemotaxis transducer, at 380,919 to 382,544
_0317
PP_0318: PP_0318 - conserved protein of unknown function, at 382,811 to 383,041
_0318
PP_0319: PP_0319 - conserved protein of unknown function, at 383,038 to 383,340
_0319
PP_0320: PP_0320 - Methyl-accepting chemotaxis transducer, at 383,523 to 385,460
_0320
Position (kb) 382
383
384 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 381.905 kb on + strand, within PP_0317 at 381.905 kb on + strand, within PP_0317 at 381.942 kb on + strand, within PP_0317 at 381.942 kb on + strand, within PP_0317 at 381.942 kb on + strand, within PP_0317 at 381.943 kb on - strand, within PP_0317 at 381.991 kb on + strand, within PP_0317 at 381.991 kb on + strand, within PP_0317 at 382.044 kb on + strand, within PP_0317 at 382.045 kb on - strand, within PP_0317 at 382.045 kb on - strand, within PP_0317 at 382.045 kb on - strand, within PP_0317 at 382.172 kb on - strand, within PP_0317 at 382.241 kb on - strand, within PP_0317 at 382.287 kb on - strand, within PP_0317 at 382.356 kb on + strand, within PP_0317 at 382.357 kb on - strand, within PP_0317 at 382.439 kb on + strand at 382.440 kb on - strand at 382.440 kb on - strand at 382.440 kb on - strand at 382.464 kb on - strand at 382.464 kb on - strand at 382.523 kb on + strand at 382.704 kb on - strand at 382.732 kb on + strand at 382.733 kb on - strand at 382.747 kb on + strand at 382.747 kb on + strand at 382.756 kb on + strand at 382.804 kb on + strand at 382.805 kb on - strand at 383.223 kb on + strand, within PP_0319 at 383.224 kb on - strand, within PP_0319 at 383.338 kb on + strand at 383.339 kb on - strand at 383.463 kb on + strand at 383.502 kb on + strand at 383.503 kb on - strand at 383.503 kb on - strand at 383.516 kb on + strand at 383.516 kb on + strand at 383.516 kb on + strand at 383.528 kb on + strand at 383.528 kb on + strand at 383.528 kb on + strand at 383.528 kb on + strand at 383.528 kb on + strand at 383.528 kb on + strand at 383.528 kb on + strand at 383.529 kb on - strand at 383.529 kb on - strand at 383.529 kb on - strand at 383.529 kb on - strand at 383.529 kb on - strand at 383.537 kb on + strand at 383.538 kb on - strand at 383.609 kb on + strand at 383.748 kb on - strand, within PP_0320 at 383.814 kb on + strand, within PP_0320 at 383.849 kb on + strand, within PP_0320 at 383.849 kb on + strand, within PP_0320 at 383.849 kb on + strand, within PP_0320 at 383.850 kb on - strand, within PP_0320 at 383.852 kb on + strand, within PP_0320 at 383.852 kb on + strand, within PP_0320 at 383.853 kb on - strand, within PP_0320 at 383.883 kb on + strand, within PP_0320 at 383.883 kb on + strand, within PP_0320 at 383.884 kb on - strand, within PP_0320 at 383.884 kb on - strand, within PP_0320 at 383.886 kb on + strand, within PP_0320 at 383.886 kb on + strand, within PP_0320 at 383.886 kb on + strand, within PP_0320 at 383.887 kb on - strand, within PP_0320 at 383.946 kb on + strand, within PP_0320 at 383.946 kb on + strand, within PP_0320 at 383.947 kb on - strand, within PP_0320 at 384.031 kb on - strand, within PP_0320
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 381,905 + PP_0317 0.61 -1.4 381,905 + PP_0317 0.61 -1.3 381,942 + PP_0317 0.63 -1.4 381,942 + PP_0317 0.63 -0.7 381,942 + PP_0317 0.63 -0.8 381,943 - PP_0317 0.63 +0.4 381,991 + PP_0317 0.66 -2.4 381,991 + PP_0317 0.66 -0.3 382,044 + PP_0317 0.69 +0.4 382,045 - PP_0317 0.69 -2.2 382,045 - PP_0317 0.69 +0.3 382,045 - PP_0317 0.69 -0.2 382,172 - PP_0317 0.77 -1.1 382,241 - PP_0317 0.81 +0.8 382,287 - PP_0317 0.84 -0.2 382,356 + PP_0317 0.88 +1.4 382,357 - PP_0317 0.88 +1.0 382,439 + -0.0 382,440 - -0.0 382,440 - +0.3 382,440 - +1.1 382,464 - +0.5 382,464 - -0.3 382,523 + +0.1 382,704 - -1.4 382,732 + -0.8 382,733 - +1.6 382,747 + -0.7 382,747 + +0.2 382,756 + +0.3 382,804 + -1.5 382,805 - +0.9 383,223 + PP_0319 0.61 +2.7 383,224 - PP_0319 0.61 +0.9 383,338 + +0.8 383,339 - -3.5 383,463 + +1.1 383,502 + +0.8 383,503 - +0.9 383,503 - -0.3 383,516 + -0.1 383,516 + -0.1 383,516 + -2.5 383,528 + -0.0 383,528 + +0.8 383,528 + -0.6 383,528 + +0.3 383,528 + +1.7 383,528 + +0.5 383,528 + -0.8 383,529 - +0.7 383,529 - -3.0 383,529 - +0.1 383,529 - -1.1 383,529 - -0.5 383,537 + -0.4 383,538 - -1.8 383,609 + -0.1 383,748 - PP_0320 0.12 +0.2 383,814 + PP_0320 0.15 +0.9 383,849 + PP_0320 0.17 -1.0 383,849 + PP_0320 0.17 -0.3 383,849 + PP_0320 0.17 -0.5 383,850 - PP_0320 0.17 -1.5 383,852 + PP_0320 0.17 -2.3 383,852 + PP_0320 0.17 -0.3 383,853 - PP_0320 0.17 -0.5 383,883 + PP_0320 0.19 +0.1 383,883 + PP_0320 0.19 +0.7 383,884 - PP_0320 0.19 -3.8 383,884 - PP_0320 0.19 -1.7 383,886 + PP_0320 0.19 -0.2 383,886 + PP_0320 0.19 -2.8 383,886 + PP_0320 0.19 -2.5 383,887 - PP_0320 0.19 +0.7 383,946 + PP_0320 0.22 -1.2 383,946 + PP_0320 0.22 +0.4 383,947 - PP_0320 0.22 +0.6 384,031 - PP_0320 0.26 +0.8
Or see this region's nucleotide sequence