Strain Fitness in Pseudomonas putida KT2440 around PP_0311

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0310 and PP_0311 are separated by 178 nucleotidesPP_0311 and PP_0312 overlap by 1 nucleotides PP_0310: PP_0310 - putative dimethylglycine dehydrogenase subunit, at 370,520 to 372,580 _0310 PP_0311: PP_0311 - putative dimethylglycine dehydrogenase subunit, at 372,759 to 374,711 _0311 PP_0312: PP_0312 - electron transfer flavoprotein, alpha subunit, at 374,711 to 375,943 _0312 Position (kb) 372 373 374 375Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 371.848 kb on + strand, within PP_0310at 371.861 kb on + strand, within PP_0310at 371.862 kb on - strand, within PP_0310at 371.964 kb on + strand, within PP_0310at 371.965 kb on - strand, within PP_0310at 372.054 kb on + strand, within PP_0310at 372.055 kb on - strand, within PP_0310at 372.080 kb on + strand, within PP_0310at 372.106 kb on + strand, within PP_0310at 372.107 kb on - strand, within PP_0310at 372.209 kb on + strand, within PP_0310at 372.209 kb on + strand, within PP_0310at 372.209 kb on + strand, within PP_0310at 372.210 kb on - strand, within PP_0310at 372.210 kb on - strand, within PP_0310at 372.210 kb on - strand, within PP_0310at 372.212 kb on + strand, within PP_0310at 372.213 kb on - strand, within PP_0310at 372.213 kb on - strand, within PP_0310at 372.224 kb on + strand, within PP_0310at 372.224 kb on + strand, within PP_0310at 372.225 kb on - strand, within PP_0310at 372.314 kb on + strand, within PP_0310at 372.314 kb on + strand, within PP_0310at 372.315 kb on - strand, within PP_0310at 372.315 kb on - strand, within PP_0310at 372.315 kb on - strand, within PP_0310at 372.389 kb on + strandat 372.389 kb on + strandat 372.390 kb on - strandat 372.390 kb on - strandat 372.390 kb on - strandat 372.390 kb on - strandat 372.392 kb on + strandat 372.392 kb on + strandat 372.393 kb on - strandat 372.393 kb on - strandat 372.393 kb on - strandat 372.491 kb on + strandat 372.491 kb on + strandat 372.492 kb on - strandat 372.500 kb on + strandat 372.548 kb on + strandat 372.548 kb on + strandat 372.548 kb on + strandat 372.548 kb on + strandat 372.585 kb on + strandat 372.585 kb on + strandat 372.697 kb on + strandat 372.697 kb on + strandat 372.697 kb on + strandat 372.697 kb on + strandat 372.697 kb on + strandat 372.698 kb on - strandat 372.698 kb on - strandat 372.698 kb on - strandat 372.775 kb on + strandat 372.775 kb on + strandat 372.775 kb on + strandat 372.776 kb on - strandat 372.776 kb on - strandat 372.942 kb on + strandat 372.942 kb on + strandat 372.942 kb on + strandat 372.942 kb on + strandat 372.942 kb on + strandat 372.942 kb on + strandat 372.943 kb on - strandat 372.943 kb on - strandat 372.943 kb on - strandat 372.943 kb on - strandat 373.626 kb on + strand, within PP_0311at 373.997 kb on + strand, within PP_0311at 373.998 kb on - strand, within PP_0311at 374.021 kb on - strand, within PP_0311at 374.215 kb on - strand, within PP_0311at 374.236 kb on - strand, within PP_0311at 374.236 kb on - strand, within PP_0311at 374.259 kb on + strand, within PP_0311at 374.259 kb on + strand, within PP_0311at 374.259 kb on + strand, within PP_0311at 374.259 kb on + strand, within PP_0311at 374.260 kb on - strand, within PP_0311at 374.325 kb on + strand, within PP_0311at 374.325 kb on + strand, within PP_0311at 374.326 kb on - strand, within PP_0311at 374.326 kb on - strand, within PP_0311at 374.365 kb on - strand, within PP_0311at 374.496 kb on - strand, within PP_0311at 374.722 kb on + strandat 374.990 kb on + strand, within PP_0312at 374.990 kb on + strand, within PP_0312at 374.990 kb on + strand, within PP_0312at 374.991 kb on - strand, within PP_0312at 374.991 kb on - strand, within PP_0312at 374.991 kb on - strand, within PP_0312at 374.991 kb on - strand, within PP_0312at 375.185 kb on + strand, within PP_0312at 375.358 kb on + strand, within PP_0312at 375.615 kb on - strand, within PP_0312

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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371,848 + PP_0310 0.64 -2.2
371,861 + PP_0310 0.65 -0.8
371,862 - PP_0310 0.65 -3.9
371,964 + PP_0310 0.70 -2.9
371,965 - PP_0310 0.70 -2.2
372,054 + PP_0310 0.74 -2.3
372,055 - PP_0310 0.74 -0.7
372,080 + PP_0310 0.76 -2.1
372,106 + PP_0310 0.77 -1.1
372,107 - PP_0310 0.77 -1.0
372,209 + PP_0310 0.82 -3.2
372,209 + PP_0310 0.82 -1.1
372,209 + PP_0310 0.82 -1.5
372,210 - PP_0310 0.82 -2.1
372,210 - PP_0310 0.82 -2.8
372,210 - PP_0310 0.82 -1.0
372,212 + PP_0310 0.82 -3.1
372,213 - PP_0310 0.82 -2.7
372,213 - PP_0310 0.82 -1.6
372,224 + PP_0310 0.83 -2.1
372,224 + PP_0310 0.83 -0.2
372,225 - PP_0310 0.83 -4.1
372,314 + PP_0310 0.87 -0.5
372,314 + PP_0310 0.87 -0.5
372,315 - PP_0310 0.87 -3.6
372,315 - PP_0310 0.87 -2.3
372,315 - PP_0310 0.87 -2.3
372,389 + -3.1
372,389 + -2.3
372,390 - -1.8
372,390 - -3.4
372,390 - -2.2
372,390 - -3.5
372,392 + -0.2
372,392 + -1.0
372,393 - +0.2
372,393 - -3.3
372,393 - +1.6
372,491 + -3.3
372,491 + -2.5
372,492 - -2.2
372,500 + -2.8
372,548 + -2.5
372,548 + -4.1
372,548 + -3.1
372,548 + -0.2
372,585 + -1.6
372,585 + -0.4
372,697 + +1.3
372,697 + +0.5
372,697 + -0.1
372,697 + +0.7
372,697 + +0.2
372,698 - -3.1
372,698 - -3.2
372,698 - -2.7
372,775 + -2.2
372,775 + +0.1
372,775 + -3.1
372,776 - -2.6
372,776 - -0.9
372,942 + -1.5
372,942 + -2.3
372,942 + -0.7
372,942 + -4.2
372,942 + -4.1
372,942 + -2.2
372,943 - -3.2
372,943 - -0.6
372,943 - -3.4
372,943 - -2.1
373,626 + PP_0311 0.44 -2.7
373,997 + PP_0311 0.63 -1.6
373,998 - PP_0311 0.63 -2.3
374,021 - PP_0311 0.65 -0.4
374,215 - PP_0311 0.75 -4.4
374,236 - PP_0311 0.76 -3.1
374,236 - PP_0311 0.76 -2.0
374,259 + PP_0311 0.77 -3.3
374,259 + PP_0311 0.77 -0.8
374,259 + PP_0311 0.77 -2.7
374,259 + PP_0311 0.77 -1.8
374,260 - PP_0311 0.77 -1.9
374,325 + PP_0311 0.80 -0.7
374,325 + PP_0311 0.80 -1.8
374,326 - PP_0311 0.80 -2.8
374,326 - PP_0311 0.80 -0.2
374,365 - PP_0311 0.82 -0.1
374,496 - PP_0311 0.89 -2.5
374,722 + -1.5
374,990 + PP_0312 0.23 -3.2
374,990 + PP_0312 0.23 -2.3
374,990 + PP_0312 0.23 +0.1
374,991 - PP_0312 0.23 -1.7
374,991 - PP_0312 0.23 -2.9
374,991 - PP_0312 0.23 -1.3
374,991 - PP_0312 0.23 -1.6
375,185 + PP_0312 0.38 -1.8
375,358 + PP_0312 0.52 -2.6
375,615 - PP_0312 0.73 -2.3

Or see this region's nucleotide sequence