Strain Fitness in Pseudomonas putida KT2440 around PP_0310

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0308 and PP_0309 are separated by 75 nucleotidesPP_0309 and PP_0310 are separated by 15 nucleotidesPP_0310 and PP_0311 are separated by 178 nucleotides PP_0308: PP_0308 - putative dipeptidase, at 368,921 to 369,898 _0308 PP_0309: PP_0309 - conserved protein of unknown function, at 369,974 to 370,504 _0309 PP_0310: PP_0310 - putative dimethylglycine dehydrogenase subunit, at 370,520 to 372,580 _0310 PP_0311: PP_0311 - putative dimethylglycine dehydrogenase subunit, at 372,759 to 374,711 _0311 Position (kb) 370 371 372 373Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 369.602 kb on + strand, within PP_0308at 369.603 kb on - strand, within PP_0308at 369.620 kb on + strand, within PP_0308at 369.620 kb on + strand, within PP_0308at 369.620 kb on + strand, within PP_0308at 369.621 kb on - strand, within PP_0308at 369.621 kb on - strand, within PP_0308at 369.702 kb on - strand, within PP_0308at 369.702 kb on - strand, within PP_0308at 369.722 kb on + strand, within PP_0308at 369.896 kb on + strandat 369.897 kb on - strandat 369.917 kb on + strandat 369.917 kb on + strandat 369.918 kb on - strandat 370.055 kb on + strand, within PP_0309at 370.055 kb on + strand, within PP_0309at 370.055 kb on + strand, within PP_0309at 370.055 kb on + strand, within PP_0309at 370.056 kb on - strand, within PP_0309at 370.056 kb on - strand, within PP_0309at 370.056 kb on - strand, within PP_0309at 370.056 kb on - strand, within PP_0309at 370.056 kb on - strand, within PP_0309at 370.087 kb on + strand, within PP_0309at 370.087 kb on + strand, within PP_0309at 370.088 kb on - strand, within PP_0309at 370.121 kb on + strand, within PP_0309at 370.122 kb on - strand, within PP_0309at 370.136 kb on + strand, within PP_0309at 370.136 kb on + strand, within PP_0309at 370.136 kb on + strand, within PP_0309at 370.136 kb on + strand, within PP_0309at 370.148 kb on + strand, within PP_0309at 370.291 kb on + strand, within PP_0309at 370.292 kb on - strand, within PP_0309at 370.328 kb on + strand, within PP_0309at 370.328 kb on + strand, within PP_0309at 370.328 kb on + strand, within PP_0309at 370.329 kb on - strand, within PP_0309at 370.329 kb on - strand, within PP_0309at 370.329 kb on - strand, within PP_0309at 370.329 kb on - strand, within PP_0309at 370.334 kb on + strand, within PP_0309at 370.334 kb on + strand, within PP_0309at 370.334 kb on + strand, within PP_0309at 370.335 kb on - strand, within PP_0309at 370.361 kb on + strand, within PP_0309at 370.361 kb on + strand, within PP_0309at 370.361 kb on + strand, within PP_0309at 370.362 kb on - strand, within PP_0309at 370.362 kb on - strand, within PP_0309at 370.362 kb on - strand, within PP_0309at 370.362 kb on - strand, within PP_0309at 370.448 kb on + strand, within PP_0309at 370.449 kb on - strand, within PP_0309at 370.489 kb on + strandat 370.513 kb on + strandat 370.607 kb on + strandat 370.607 kb on + strandat 370.607 kb on + strandat 370.608 kb on - strandat 370.640 kb on + strandat 370.641 kb on - strandat 370.649 kb on + strandat 370.650 kb on - strandat 370.652 kb on + strandat 370.835 kb on - strand, within PP_0310at 370.973 kb on + strand, within PP_0310at 370.974 kb on - strand, within PP_0310at 370.974 kb on - strand, within PP_0310at 371.188 kb on + strand, within PP_0310at 371.188 kb on + strand, within PP_0310at 371.189 kb on - strand, within PP_0310at 371.189 kb on - strand, within PP_0310at 371.189 kb on - strand, within PP_0310at 371.252 kb on + strand, within PP_0310at 371.252 kb on + strand, within PP_0310at 371.253 kb on - strand, within PP_0310at 371.255 kb on + strand, within PP_0310at 371.256 kb on - strand, within PP_0310at 371.309 kb on - strand, within PP_0310at 371.314 kb on + strand, within PP_0310at 371.314 kb on + strand, within PP_0310at 371.315 kb on - strandat 371.315 kb on - strand, within PP_0310at 371.315 kb on - strand, within PP_0310at 371.576 kb on + strand, within PP_0310at 371.577 kb on - strand, within PP_0310at 371.577 kb on - strand, within PP_0310at 371.577 kb on - strand, within PP_0310at 371.646 kb on - strand, within PP_0310at 371.646 kb on - strand, within PP_0310at 371.646 kb on - strand, within PP_0310at 371.848 kb on + strand, within PP_0310at 371.861 kb on + strand, within PP_0310at 371.862 kb on - strand, within PP_0310at 371.964 kb on + strand, within PP_0310at 371.965 kb on - strand, within PP_0310at 372.054 kb on + strand, within PP_0310at 372.055 kb on - strand, within PP_0310at 372.080 kb on + strand, within PP_0310at 372.106 kb on + strand, within PP_0310at 372.107 kb on - strand, within PP_0310at 372.209 kb on + strand, within PP_0310at 372.209 kb on + strand, within PP_0310at 372.209 kb on + strand, within PP_0310at 372.210 kb on - strand, within PP_0310at 372.210 kb on - strand, within PP_0310at 372.210 kb on - strand, within PP_0310at 372.212 kb on + strand, within PP_0310at 372.213 kb on - strand, within PP_0310at 372.213 kb on - strand, within PP_0310at 372.224 kb on + strand, within PP_0310at 372.224 kb on + strand, within PP_0310at 372.225 kb on - strand, within PP_0310at 372.314 kb on + strand, within PP_0310at 372.314 kb on + strand, within PP_0310at 372.315 kb on - strand, within PP_0310at 372.315 kb on - strand, within PP_0310at 372.315 kb on - strand, within PP_0310at 372.389 kb on + strandat 372.389 kb on + strandat 372.390 kb on - strandat 372.390 kb on - strandat 372.390 kb on - strandat 372.390 kb on - strandat 372.392 kb on + strandat 372.392 kb on + strandat 372.393 kb on - strandat 372.393 kb on - strandat 372.393 kb on - strandat 372.491 kb on + strandat 372.491 kb on + strandat 372.492 kb on - strandat 372.500 kb on + strandat 372.548 kb on + strandat 372.548 kb on + strandat 372.548 kb on + strandat 372.548 kb on + strandat 372.585 kb on + strandat 372.585 kb on + strandat 372.697 kb on + strandat 372.697 kb on + strandat 372.697 kb on + strandat 372.697 kb on + strandat 372.697 kb on + strandat 372.698 kb on - strandat 372.698 kb on - strandat 372.698 kb on - strandat 372.775 kb on + strandat 372.775 kb on + strandat 372.775 kb on + strandat 372.776 kb on - strandat 372.776 kb on - strandat 372.942 kb on + strandat 372.942 kb on + strandat 372.942 kb on + strandat 372.942 kb on + strandat 372.942 kb on + strandat 372.942 kb on + strandat 372.943 kb on - strandat 372.943 kb on - strandat 372.943 kb on - strandat 372.943 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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369,602 + PP_0308 0.70 -0.1
369,603 - PP_0308 0.70 -1.5
369,620 + PP_0308 0.71 -0.1
369,620 + PP_0308 0.71 +0.9
369,620 + PP_0308 0.71 -1.5
369,621 - PP_0308 0.72 -2.8
369,621 - PP_0308 0.72 -3.4
369,702 - PP_0308 0.80 -2.8
369,702 - PP_0308 0.80 -3.3
369,722 + PP_0308 0.82 +0.9
369,896 + +0.3
369,897 - -1.2
369,917 + +0.1
369,917 + -0.4
369,918 - -1.2
370,055 + PP_0309 0.15 -0.6
370,055 + PP_0309 0.15 -0.5
370,055 + PP_0309 0.15 -0.8
370,055 + PP_0309 0.15 +0.1
370,056 - PP_0309 0.15 -3.2
370,056 - PP_0309 0.15 -2.6
370,056 - PP_0309 0.15 -1.4
370,056 - PP_0309 0.15 -2.3
370,056 - PP_0309 0.15 -2.5
370,087 + PP_0309 0.21 +0.3
370,087 + PP_0309 0.21 -0.9
370,088 - PP_0309 0.21 -1.2
370,121 + PP_0309 0.28 -0.6
370,122 - PP_0309 0.28 -0.8
370,136 + PP_0309 0.31 +1.4
370,136 + PP_0309 0.31 +0.3
370,136 + PP_0309 0.31 +0.5
370,136 + PP_0309 0.31 -0.0
370,148 + PP_0309 0.33 +1.3
370,291 + PP_0309 0.60 +0.4
370,292 - PP_0309 0.60 -1.9
370,328 + PP_0309 0.67 +0.4
370,328 + PP_0309 0.67 +0.8
370,328 + PP_0309 0.67 +0.2
370,329 - PP_0309 0.67 -2.2
370,329 - PP_0309 0.67 -0.3
370,329 - PP_0309 0.67 -0.1
370,329 - PP_0309 0.67 -0.2
370,334 + PP_0309 0.68 -1.5
370,334 + PP_0309 0.68 +1.3
370,334 + PP_0309 0.68 -3.3
370,335 - PP_0309 0.68 -1.8
370,361 + PP_0309 0.73 -0.8
370,361 + PP_0309 0.73 +1.1
370,361 + PP_0309 0.73 +1.5
370,362 - PP_0309 0.73 -0.5
370,362 - PP_0309 0.73 -2.6
370,362 - PP_0309 0.73 -2.3
370,362 - PP_0309 0.73 -3.4
370,448 + PP_0309 0.89 -0.1
370,449 - PP_0309 0.89 -1.3
370,489 + -3.8
370,513 + +0.3
370,607 + +1.6
370,607 + -3.2
370,607 + -2.0
370,608 - -2.7
370,640 + -2.7
370,641 - -1.3
370,649 + -2.6
370,650 - -3.4
370,652 + -1.3
370,835 - PP_0310 0.15 -0.2
370,973 + PP_0310 0.22 -3.8
370,974 - PP_0310 0.22 -1.5
370,974 - PP_0310 0.22 -4.3
371,188 + PP_0310 0.32 -2.4
371,188 + PP_0310 0.32 -3.6
371,189 - PP_0310 0.32 -2.5
371,189 - PP_0310 0.32 -3.2
371,189 - PP_0310 0.32 -2.8
371,252 + PP_0310 0.36 -1.6
371,252 + PP_0310 0.36 -2.2
371,253 - PP_0310 0.36 -2.0
371,255 + PP_0310 0.36 -4.0
371,256 - PP_0310 0.36 -0.8
371,309 - PP_0310 0.38 -4.0
371,314 + PP_0310 0.39 -2.4
371,314 + PP_0310 0.39 -0.8
371,315 - +0.2
371,315 - PP_0310 0.39 -4.2
371,315 - PP_0310 0.39 -2.9
371,576 + PP_0310 0.51 -0.1
371,577 - PP_0310 0.51 -3.5
371,577 - PP_0310 0.51 -1.6
371,577 - PP_0310 0.51 -1.4
371,646 - PP_0310 0.55 -0.6
371,646 - PP_0310 0.55 -3.4
371,646 - PP_0310 0.55 -3.1
371,848 + PP_0310 0.64 -2.2
371,861 + PP_0310 0.65 -0.8
371,862 - PP_0310 0.65 -3.9
371,964 + PP_0310 0.70 -2.9
371,965 - PP_0310 0.70 -2.2
372,054 + PP_0310 0.74 -2.3
372,055 - PP_0310 0.74 -0.7
372,080 + PP_0310 0.76 -2.1
372,106 + PP_0310 0.77 -1.1
372,107 - PP_0310 0.77 -1.0
372,209 + PP_0310 0.82 -3.2
372,209 + PP_0310 0.82 -1.1
372,209 + PP_0310 0.82 -1.5
372,210 - PP_0310 0.82 -2.1
372,210 - PP_0310 0.82 -2.8
372,210 - PP_0310 0.82 -1.0
372,212 + PP_0310 0.82 -3.1
372,213 - PP_0310 0.82 -2.7
372,213 - PP_0310 0.82 -1.6
372,224 + PP_0310 0.83 -2.1
372,224 + PP_0310 0.83 -0.2
372,225 - PP_0310 0.83 -4.1
372,314 + PP_0310 0.87 -0.5
372,314 + PP_0310 0.87 -0.5
372,315 - PP_0310 0.87 -3.6
372,315 - PP_0310 0.87 -2.3
372,315 - PP_0310 0.87 -2.3
372,389 + -3.1
372,389 + -2.3
372,390 - -1.8
372,390 - -3.4
372,390 - -2.2
372,390 - -3.5
372,392 + -0.2
372,392 + -1.0
372,393 - +0.2
372,393 - -3.3
372,393 - +1.6
372,491 + -3.3
372,491 + -2.5
372,492 - -2.2
372,500 + -2.8
372,548 + -2.5
372,548 + -4.1
372,548 + -3.1
372,548 + -0.2
372,585 + -1.6
372,585 + -0.4
372,697 + +1.3
372,697 + +0.5
372,697 + -0.1
372,697 + +0.7
372,697 + +0.2
372,698 - -3.1
372,698 - -3.2
372,698 - -2.7
372,775 + -2.2
372,775 + +0.1
372,775 + -3.1
372,776 - -2.6
372,776 - -0.9
372,942 + -1.5
372,942 + -2.3
372,942 + -0.7
372,942 + -4.2
372,942 + -4.1
372,942 + -2.2
372,943 - -3.2
372,943 - -0.6
372,943 - -3.4
372,943 - -2.1

Or see this region's nucleotide sequence