Strain Fitness in Pseudomonas putida KT2440 around PP_0146

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0145 and PP_0146 are separated by 282 nucleotidesPP_0146 and PP_0147 are separated by 42 nucleotides PP_0145: PP_0145 - Na+/Pi-cotransporter, at 153,637 to 155,295 _0145 PP_0146: PP_0146 - putative transport protein, at 155,578 to 156,375 _0146 PP_0147: PP_0147 - Citrate transporter, at 156,418 to 157,725 _0147 Position (kb) 155 156 157Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 154.615 kb on - strand, within PP_0145at 154.615 kb on - strand, within PP_0145at 154.615 kb on - strand, within PP_0145at 154.857 kb on + strand, within PP_0145at 155.224 kb on - strandat 155.316 kb on + strandat 155.316 kb on + strandat 155.317 kb on - strandat 155.427 kb on - strandat 155.531 kb on - strandat 155.531 kb on - strandat 155.702 kb on + strand, within PP_0146at 155.702 kb on + strand, within PP_0146at 155.702 kb on + strand, within PP_0146at 155.708 kb on + strand, within PP_0146at 155.708 kb on + strand, within PP_0146at 155.708 kb on + strand, within PP_0146at 155.708 kb on + strand, within PP_0146at 155.708 kb on + strand, within PP_0146at 155.709 kb on - strand, within PP_0146at 155.709 kb on - strand, within PP_0146at 155.709 kb on - strand, within PP_0146at 155.749 kb on + strand, within PP_0146at 155.749 kb on + strand, within PP_0146at 155.750 kb on - strand, within PP_0146at 155.754 kb on + strand, within PP_0146at 155.885 kb on - strand, within PP_0146at 155.966 kb on + strand, within PP_0146at 155.966 kb on + strand, within PP_0146at 155.966 kb on + strand, within PP_0146at 155.966 kb on + strand, within PP_0146at 155.967 kb on - strand, within PP_0146at 155.967 kb on - strand, within PP_0146at 155.967 kb on - strandat 155.967 kb on - strand, within PP_0146at 156.001 kb on + strand, within PP_0146at 156.001 kb on + strand, within PP_0146at 156.001 kb on + strand, within PP_0146at 156.002 kb on - strand, within PP_0146at 156.032 kb on + strand, within PP_0146at 156.032 kb on + strand, within PP_0146at 156.033 kb on - strand, within PP_0146at 156.033 kb on - strand, within PP_0146at 156.033 kb on - strand, within PP_0146at 156.033 kb on - strand, within PP_0146at 156.153 kb on + strand, within PP_0146at 156.153 kb on + strand, within PP_0146at 156.174 kb on + strand, within PP_0146at 156.175 kb on - strand, within PP_0146at 156.175 kb on - strand, within PP_0146at 156.300 kb on + strandat 156.351 kb on - strandat 156.355 kb on + strandat 156.368 kb on - strandat 156.408 kb on + strandat 156.409 kb on - strandat 156.416 kb on + strandat 156.417 kb on - strandat 156.417 kb on - strandat 156.417 kb on - strandat 156.417 kb on - strandat 156.419 kb on + strandat 156.419 kb on + strandat 156.419 kb on + strandat 156.419 kb on + strandat 156.420 kb on - strandat 156.420 kb on - strandat 156.426 kb on + strandat 156.427 kb on - strandat 156.469 kb on + strandat 156.469 kb on + strandat 156.470 kb on - strandat 156.470 kb on - strandat 156.481 kb on + strandat 156.481 kb on + strandat 156.481 kb on + strandat 156.481 kb on + strandat 156.482 kb on - strandat 156.554 kb on + strand, within PP_0147at 156.554 kb on + strand, within PP_0147at 156.554 kb on + strand, within PP_0147at 156.554 kb on + strand, within PP_0147at 156.555 kb on - strand, within PP_0147at 156.639 kb on - strand, within PP_0147at 156.677 kb on + strand, within PP_0147at 156.678 kb on - strand, within PP_0147at 156.680 kb on + strand, within PP_0147at 156.680 kb on + strand, within PP_0147at 156.681 kb on - strand, within PP_0147at 156.746 kb on + strand, within PP_0147at 156.747 kb on - strand, within PP_0147at 156.747 kb on - strand, within PP_0147at 156.868 kb on + strand, within PP_0147at 156.868 kb on + strand, within PP_0147at 156.868 kb on + strand, within PP_0147at 156.868 kb on + strand, within PP_0147at 156.920 kb on + strand, within PP_0147at 156.920 kb on + strand, within PP_0147at 156.920 kb on + strand, within PP_0147at 156.921 kb on - strand, within PP_0147at 156.921 kb on - strand, within PP_0147at 156.921 kb on - strand, within PP_0147at 157.028 kb on + strand, within PP_0147at 157.028 kb on + strand, within PP_0147at 157.029 kb on - strand, within PP_0147at 157.029 kb on - strand, within PP_0147at 157.142 kb on + strand, within PP_0147at 157.142 kb on + strand, within PP_0147at 157.142 kb on + strand, within PP_0147at 157.142 kb on + strand, within PP_0147at 157.142 kb on + strand, within PP_0147at 157.142 kb on + strand, within PP_0147at 157.143 kb on - strand, within PP_0147at 157.143 kb on - strand, within PP_0147at 157.143 kb on - strand, within PP_0147at 157.148 kb on + strand, within PP_0147at 157.148 kb on + strand, within PP_0147at 157.149 kb on - strand, within PP_0147at 157.149 kb on - strand, within PP_0147at 157.149 kb on - strand, within PP_0147at 157.149 kb on - strand, within PP_0147at 157.172 kb on - strand, within PP_0147at 157.201 kb on + strand, within PP_0147at 157.223 kb on - strand, within PP_0147at 157.340 kb on + strandat 157.340 kb on + strand, within PP_0147at 157.340 kb on + strand, within PP_0147at 157.341 kb on - strand, within PP_0147at 157.341 kb on - strand, within PP_0147at 157.373 kb on + strand, within PP_0147at 157.373 kb on + strand, within PP_0147at 157.373 kb on + strand, within PP_0147at 157.373 kb on + strand, within PP_0147at 157.373 kb on + strand, within PP_0147at 157.373 kb on + strand, within PP_0147at 157.374 kb on - strand, within PP_0147at 157.374 kb on - strand, within PP_0147at 157.374 kb on - strand, within PP_0147

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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154,615 - PP_0145 0.59 -0.4
154,615 - PP_0145 0.59 +2.3
154,615 - PP_0145 0.59 -0.4
154,857 + PP_0145 0.74 +0.4
155,224 - +0.8
155,316 + +0.5
155,316 + -2.6
155,317 - +2.0
155,427 - +0.3
155,531 - -0.0
155,531 - -3.2
155,702 + PP_0146 0.16 +0.5
155,702 + PP_0146 0.16 +0.5
155,702 + PP_0146 0.16 +1.5
155,708 + PP_0146 0.16 +1.1
155,708 + PP_0146 0.16 +1.7
155,708 + PP_0146 0.16 +1.1
155,708 + PP_0146 0.16 +0.3
155,708 + PP_0146 0.16 -2.3
155,709 - PP_0146 0.16 -0.3
155,709 - PP_0146 0.16 -0.1
155,709 - PP_0146 0.16 -0.1
155,749 + PP_0146 0.21 -0.8
155,749 + PP_0146 0.21 -0.5
155,750 - PP_0146 0.22 +2.0
155,754 + PP_0146 0.22 +1.8
155,885 - PP_0146 0.38 +0.4
155,966 + PP_0146 0.49 +2.4
155,966 + PP_0146 0.49 -0.0
155,966 + PP_0146 0.49 -1.2
155,966 + PP_0146 0.49 -0.3
155,967 - PP_0146 0.49 +1.1
155,967 - PP_0146 0.49 +0.9
155,967 - +0.0
155,967 - PP_0146 0.49 +0.5
156,001 + PP_0146 0.53 +2.0
156,001 + PP_0146 0.53 +0.1
156,001 + PP_0146 0.53 +2.1
156,002 - PP_0146 0.53 +1.5
156,032 + PP_0146 0.57 +1.8
156,032 + PP_0146 0.57 +1.5
156,033 - PP_0146 0.57 -1.6
156,033 - PP_0146 0.57 +0.4
156,033 - PP_0146 0.57 +1.2
156,033 - PP_0146 0.57 +1.8
156,153 + PP_0146 0.72 -1.7
156,153 + PP_0146 0.72 +2.1
156,174 + PP_0146 0.75 +1.5
156,175 - PP_0146 0.75 +2.0
156,175 - PP_0146 0.75 +1.1
156,300 + +0.1
156,351 - +1.1
156,355 + +0.7
156,368 - -3.3
156,408 + +0.3
156,409 - -0.7
156,416 + +1.7
156,417 - -3.5
156,417 - -1.2
156,417 - -3.2
156,417 - -1.4
156,419 + +0.1
156,419 + +1.5
156,419 + +1.5
156,419 + +2.1
156,420 - -1.6
156,420 - -3.7
156,426 + +0.3
156,427 - -3.2
156,469 + +1.6
156,469 + +0.6
156,470 - -3.0
156,470 - -0.5
156,481 + +0.1
156,481 + +1.0
156,481 + -0.9
156,481 + +1.1
156,482 - -2.0
156,554 + PP_0147 0.10 -1.3
156,554 + PP_0147 0.10 -1.3
156,554 + PP_0147 0.10 -1.2
156,554 + PP_0147 0.10 +0.5
156,555 - PP_0147 0.10 +0.6
156,639 - PP_0147 0.17 -3.3
156,677 + PP_0147 0.20 -1.8
156,678 - PP_0147 0.20 -1.5
156,680 + PP_0147 0.20 +0.6
156,680 + PP_0147 0.20 +0.1
156,681 - PP_0147 0.20 -2.1
156,746 + PP_0147 0.25 +1.3
156,747 - PP_0147 0.25 -1.7
156,747 - PP_0147 0.25 -2.7
156,868 + PP_0147 0.34 -1.7
156,868 + PP_0147 0.34 +0.7
156,868 + PP_0147 0.34 +0.8
156,868 + PP_0147 0.34 -0.4
156,920 + PP_0147 0.38 +0.1
156,920 + PP_0147 0.38 -0.8
156,920 + PP_0147 0.38 +0.2
156,921 - PP_0147 0.38 +0.2
156,921 - PP_0147 0.38 -3.6
156,921 - PP_0147 0.38 -2.4
157,028 + PP_0147 0.47 +0.3
157,028 + PP_0147 0.47 +0.1
157,029 - PP_0147 0.47 -0.4
157,029 - PP_0147 0.47 -2.2
157,142 + PP_0147 0.55 -0.7
157,142 + PP_0147 0.55 +1.0
157,142 + PP_0147 0.55 -0.4
157,142 + PP_0147 0.55 +0.4
157,142 + PP_0147 0.55 -1.2
157,142 + PP_0147 0.55 -0.6
157,143 - PP_0147 0.55 -2.4
157,143 - PP_0147 0.55 +1.1
157,143 - PP_0147 0.55 -2.6
157,148 + PP_0147 0.56 +0.1
157,148 + PP_0147 0.56 -3.3
157,149 - PP_0147 0.56 +0.0
157,149 - PP_0147 0.56 -3.0
157,149 - PP_0147 0.56 -1.1
157,149 - PP_0147 0.56 -2.5
157,172 - PP_0147 0.58 +0.7
157,201 + PP_0147 0.60 -0.9
157,223 - PP_0147 0.62 -0.3
157,340 + +1.5
157,340 + PP_0147 0.70 +0.4
157,340 + PP_0147 0.70 +0.4
157,341 - PP_0147 0.71 -1.9
157,341 - PP_0147 0.71 -1.3
157,373 + PP_0147 0.73 +0.3
157,373 + PP_0147 0.73 +0.1
157,373 + PP_0147 0.73 +0.9
157,373 + PP_0147 0.73 -0.7
157,373 + PP_0147 0.73 -3.1
157,373 + PP_0147 0.73 -0.5
157,374 - PP_0147 0.73 +0.8
157,374 - PP_0147 0.73 +0.8
157,374 - PP_0147 0.73 -1.1

Or see this region's nucleotide sequence