Strain Fitness in Pseudomonas putida KT2440 around PP_0062

Experiment: Acanthamoeba sp., muxed culture-2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0061 and PP_0062 are separated by 83 nucleotidesPP_0062 and PP_0063 are separated by 41 nucleotides PP_0061: PP_0061 - glycine-tRNA ligase alpha subunit, at 71,901 to 72,848 _0061 PP_0062: PP_0062 - 3-methyl-adenine DNA glycosylase I, at 72,932 to 73,483 _0062 PP_0063: PP_0063 - putative Lipid A biosynthesis lauroyl acyltransferase, at 73,525 to 74,412 _0063 Position (kb) 72 73 74Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 72.893 kb on - strandat 72.893 kb on - strandat 72.893 kb on - strandat 72.895 kb on - strandat 72.917 kb on - strandat 72.932 kb on - strandat 72.932 kb on - strandat 72.969 kb on - strandat 73.073 kb on - strand, within PP_0062at 73.073 kb on - strand, within PP_0062at 73.112 kb on + strand, within PP_0062at 73.112 kb on + strand, within PP_0062at 73.113 kb on - strand, within PP_0062at 73.113 kb on - strand, within PP_0062at 73.113 kb on - strand, within PP_0062at 73.113 kb on - strand, within PP_0062at 73.128 kb on + strand, within PP_0062at 73.406 kb on + strand, within PP_0062at 73.406 kb on + strand, within PP_0062at 73.407 kb on - strand, within PP_0062at 73.489 kb on + strandat 73.489 kb on + strandat 73.490 kb on - strandat 73.490 kb on - strandat 73.490 kb on - strandat 73.512 kb on - strandat 73.662 kb on - strand, within PP_0063at 73.746 kb on + strandat 73.747 kb on - strand, within PP_0063at 73.858 kb on - strand, within PP_0063at 73.915 kb on + strand, within PP_0063at 73.915 kb on + strand, within PP_0063at 73.915 kb on + strand, within PP_0063at 73.915 kb on + strand, within PP_0063at 73.916 kb on - strand, within PP_0063at 74.082 kb on + strand, within PP_0063at 74.195 kb on + strand, within PP_0063at 74.196 kb on - strand, within PP_0063at 74.275 kb on + strand, within PP_0063at 74.275 kb on + strand, within PP_0063at 74.275 kb on + strand, within PP_0063at 74.276 kb on - strand, within PP_0063at 74.276 kb on - strand, within PP_0063at 74.276 kb on - strand, within PP_0063at 74.276 kb on - strand, within PP_0063at 74.276 kb on - strand, within PP_0063at 74.329 kb on + strandat 74.330 kb on - strandat 74.330 kb on - strandat 74.330 kb on - strandat 74.330 kb on - strandat 74.341 kb on + strandat 74.353 kb on + strandat 74.353 kb on + strandat 74.354 kb on - strandat 74.354 kb on - strandat 74.354 kb on - strandat 74.410 kb on + strandat 74.410 kb on + strandat 74.411 kb on - strandat 74.411 kb on - strandat 74.411 kb on - strandat 74.411 kb on - strandat 74.411 kb on - strandat 74.411 kb on - strandat 74.431 kb on + strandat 74.431 kb on + strandat 74.431 kb on + strandat 74.431 kb on + strandat 74.431 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
remove
72,893 - -0.8
72,893 - -0.4
72,893 - -1.2
72,895 - +1.6
72,917 - -0.4
72,932 - -0.3
72,932 - +0.1
72,969 - +0.1
73,073 - PP_0062 0.26 -1.5
73,073 - PP_0062 0.26 +2.2
73,112 + PP_0062 0.33 -0.9
73,112 + PP_0062 0.33 -0.1
73,113 - PP_0062 0.33 -0.4
73,113 - PP_0062 0.33 -0.4
73,113 - PP_0062 0.33 -0.9
73,113 - PP_0062 0.33 -2.3
73,128 + PP_0062 0.36 -0.2
73,406 + PP_0062 0.86 +0.6
73,406 + PP_0062 0.86 -0.2
73,407 - PP_0062 0.86 -1.5
73,489 + -0.5
73,489 + -0.6
73,490 - -2.1
73,490 - -0.0
73,490 - -2.4
73,512 - -1.3
73,662 - PP_0063 0.15 +0.1
73,746 + +0.2
73,747 - PP_0063 0.25 -1.0
73,858 - PP_0063 0.38 -0.5
73,915 + PP_0063 0.44 -0.2
73,915 + PP_0063 0.44 -1.0
73,915 + PP_0063 0.44 +0.1
73,915 + PP_0063 0.44 +0.6
73,916 - PP_0063 0.44 -0.2
74,082 + PP_0063 0.63 -1.8
74,195 + PP_0063 0.75 -1.7
74,196 - PP_0063 0.76 -1.2
74,275 + PP_0063 0.84 +0.4
74,275 + PP_0063 0.84 +0.4
74,275 + PP_0063 0.84 -0.7
74,276 - PP_0063 0.85 -3.5
74,276 - PP_0063 0.85 -2.3
74,276 - PP_0063 0.85 -2.7
74,276 - PP_0063 0.85 -1.3
74,276 - PP_0063 0.85 +0.8
74,329 + +0.5
74,330 - -3.0
74,330 - -0.0
74,330 - +0.3
74,330 - -0.6
74,341 + -0.5
74,353 + -0.3
74,353 + -2.8
74,354 - -1.3
74,354 - +1.1
74,354 - +0.4
74,410 + +1.7
74,410 + +1.0
74,411 - -1.7
74,411 - -0.2
74,411 - +0.9
74,411 - +0.5
74,411 - +0.1
74,411 - +0.6
74,431 + +0.4
74,431 + +0.0
74,431 + -0.6
74,431 + +1.3
74,431 + +0.3

Or see this region's nucleotide sequence