Strain Fitness in Pseudomonas putida KT2440 around PP_0058

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0057 and PP_0058 are separated by 174 nucleotidesPP_0058 and PP_0059 are separated by 46 nucleotidesPP_0059 and PP_0060 are separated by 3 nucleotides PP_0057: PP_0057 - major facilitator family transporter, at 66,693 to 68,312 _0057 PP_0058: PP_0058 - putative 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 68,487 to 69,272 _0058 PP_0059: PP_0059 - D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase, at 69,319 to 69,846 _0059 PP_0060: PP_0060 - glycine-tRNA ligase beta subunit, at 69,850 to 71,904 _0060 Position (kb) 68 69 70Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 67.488 kb on + strand, within PP_0057at 67.489 kb on - strand, within PP_0057at 67.489 kb on - strand, within PP_0057at 67.489 kb on - strand, within PP_0057at 67.489 kb on - strand, within PP_0057at 67.503 kb on + strand, within PP_0057at 67.503 kb on + strand, within PP_0057at 67.504 kb on - strand, within PP_0057at 67.504 kb on - strand, within PP_0057at 67.504 kb on - strand, within PP_0057at 67.504 kb on - strand, within PP_0057at 67.504 kb on - strand, within PP_0057at 67.625 kb on + strand, within PP_0057at 67.672 kb on + strand, within PP_0057at 67.672 kb on + strand, within PP_0057at 67.673 kb on - strand, within PP_0057at 67.677 kb on + strand, within PP_0057at 67.677 kb on + strand, within PP_0057at 67.677 kb on + strand, within PP_0057at 67.677 kb on + strand, within PP_0057at 67.678 kb on - strand, within PP_0057at 67.678 kb on - strand, within PP_0057at 67.678 kb on - strand, within PP_0057at 67.678 kb on - strand, within PP_0057at 67.678 kb on - strand, within PP_0057at 67.678 kb on - strand, within PP_0057at 67.678 kb on - strand, within PP_0057at 67.708 kb on - strand, within PP_0057at 67.877 kb on + strand, within PP_0057at 67.897 kb on - strand, within PP_0057at 68.011 kb on + strand, within PP_0057at 68.012 kb on - strand, within PP_0057at 68.012 kb on - strand, within PP_0057at 68.012 kb on - strand, within PP_0057at 68.012 kb on - strand, within PP_0057at 68.012 kb on - strand, within PP_0057at 68.023 kb on + strand, within PP_0057at 68.024 kb on - strand, within PP_0057at 68.061 kb on + strand, within PP_0057at 68.061 kb on + strand, within PP_0057at 68.061 kb on + strand, within PP_0057at 68.062 kb on - strand, within PP_0057at 68.062 kb on - strand, within PP_0057at 68.062 kb on - strand, within PP_0057at 68.062 kb on - strand, within PP_0057at 68.112 kb on + strand, within PP_0057at 68.112 kb on + strand, within PP_0057at 68.113 kb on - strand, within PP_0057at 68.113 kb on - strand, within PP_0057at 68.134 kb on - strand, within PP_0057at 68.144 kb on + strand, within PP_0057at 68.144 kb on + strand, within PP_0057at 68.171 kb on + strandat 68.196 kb on + strandat 68.197 kb on - strandat 68.198 kb on + strandat 68.208 kb on - strandat 68.214 kb on + strandat 68.215 kb on - strandat 68.293 kb on + strandat 68.294 kb on - strandat 68.294 kb on - strandat 68.297 kb on + strandat 68.298 kb on - strandat 68.298 kb on - strandat 68.326 kb on + strandat 68.327 kb on - strandat 68.342 kb on - strandat 68.617 kb on + strand, within PP_0058at 68.618 kb on - strand, within PP_0058at 68.634 kb on + strand, within PP_0058at 68.634 kb on + strand, within PP_0058at 68.781 kb on + strand, within PP_0058at 68.859 kb on + strand, within PP_0058at 68.931 kb on + strand, within PP_0058at 68.931 kb on + strand, within PP_0058at 68.932 kb on - strand, within PP_0058at 68.932 kb on - strand, within PP_0058at 68.932 kb on - strand, within PP_0058at 68.935 kb on + strand, within PP_0058at 68.935 kb on + strand, within PP_0058at 68.935 kb on + strand, within PP_0058at 68.935 kb on + strand, within PP_0058at 68.935 kb on + strand, within PP_0058at 68.935 kb on + strand, within PP_0058at 68.935 kb on + strand, within PP_0058at 68.935 kb on + strand, within PP_0058at 68.936 kb on - strand, within PP_0058at 68.936 kb on - strand, within PP_0058at 68.936 kb on - strand, within PP_0058at 68.936 kb on - strand, within PP_0058at 68.936 kb on - strand, within PP_0058at 68.936 kb on - strand, within PP_0058at 68.964 kb on - strand, within PP_0058at 68.977 kb on + strand, within PP_0058at 69.071 kb on - strand, within PP_0058at 69.071 kb on - strand, within PP_0058at 69.121 kb on + strand, within PP_0058at 69.122 kb on - strand, within PP_0058at 69.139 kb on + strand, within PP_0058at 69.140 kb on - strand, within PP_0058at 69.220 kb on + strandat 69.258 kb on - strandat 69.258 kb on - strandat 69.268 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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67,488 + PP_0057 0.49 -0.2
67,489 - PP_0057 0.49 -0.1
67,489 - PP_0057 0.49 -1.2
67,489 - PP_0057 0.49 -2.6
67,489 - PP_0057 0.49 +0.0
67,503 + PP_0057 0.50 -0.3
67,503 + PP_0057 0.50 +0.7
67,504 - PP_0057 0.50 -0.5
67,504 - PP_0057 0.50 -1.1
67,504 - PP_0057 0.50 -0.3
67,504 - PP_0057 0.50 +0.6
67,504 - PP_0057 0.50 +1.1
67,625 + PP_0057 0.58 -0.4
67,672 + PP_0057 0.60 +0.7
67,672 + PP_0057 0.60 +0.6
67,673 - PP_0057 0.60 -0.3
67,677 + PP_0057 0.61 -0.7
67,677 + PP_0057 0.61 +3.8
67,677 + PP_0057 0.61 -2.8
67,677 + PP_0057 0.61 +0.4
67,678 - PP_0057 0.61 +0.5
67,678 - PP_0057 0.61 -0.9
67,678 - PP_0057 0.61 -0.4
67,678 - PP_0057 0.61 +0.3
67,678 - PP_0057 0.61 -0.7
67,678 - PP_0057 0.61 +0.5
67,678 - PP_0057 0.61 +0.7
67,708 - PP_0057 0.63 +0.2
67,877 + PP_0057 0.73 -0.1
67,897 - PP_0057 0.74 -0.8
68,011 + PP_0057 0.81 -0.9
68,012 - PP_0057 0.81 +0.8
68,012 - PP_0057 0.81 +0.1
68,012 - PP_0057 0.81 +0.1
68,012 - PP_0057 0.81 +0.9
68,012 - PP_0057 0.81 -0.3
68,023 + PP_0057 0.82 -1.4
68,024 - PP_0057 0.82 +0.2
68,061 + PP_0057 0.84 -1.4
68,061 + PP_0057 0.84 +2.8
68,061 + PP_0057 0.84 -2.1
68,062 - PP_0057 0.85 -0.6
68,062 - PP_0057 0.85 +1.0
68,062 - PP_0057 0.85 -2.5
68,062 - PP_0057 0.85 +0.8
68,112 + PP_0057 0.88 +0.5
68,112 + PP_0057 0.88 -0.3
68,113 - PP_0057 0.88 +0.7
68,113 - PP_0057 0.88 -2.7
68,134 - PP_0057 0.89 +1.1
68,144 + PP_0057 0.90 -2.5
68,144 + PP_0057 0.90 -0.0
68,171 + +1.4
68,196 + -0.9
68,197 - +0.3
68,198 + -1.4
68,208 - +0.2
68,214 + +0.6
68,215 - -0.6
68,293 + -1.8
68,294 - +1.4
68,294 - +0.0
68,297 + +1.4
68,298 - -1.4
68,298 - +0.2
68,326 + -0.4
68,327 - -1.3
68,342 - -2.3
68,617 + PP_0058 0.17 -2.4
68,618 - PP_0058 0.17 -1.7
68,634 + PP_0058 0.19 -0.0
68,634 + PP_0058 0.19 -2.4
68,781 + PP_0058 0.37 -3.9
68,859 + PP_0058 0.47 -3.4
68,931 + PP_0058 0.56 -2.6
68,931 + PP_0058 0.56 -1.6
68,932 - PP_0058 0.57 -2.5
68,932 - PP_0058 0.57 -3.1
68,932 - PP_0058 0.57 -2.1
68,935 + PP_0058 0.57 -0.9
68,935 + PP_0058 0.57 -1.5
68,935 + PP_0058 0.57 -3.8
68,935 + PP_0058 0.57 -1.9
68,935 + PP_0058 0.57 -1.7
68,935 + PP_0058 0.57 -3.1
68,935 + PP_0058 0.57 -2.2
68,935 + PP_0058 0.57 -0.5
68,936 - PP_0058 0.57 -1.2
68,936 - PP_0058 0.57 -1.5
68,936 - PP_0058 0.57 -2.9
68,936 - PP_0058 0.57 -2.8
68,936 - PP_0058 0.57 -2.0
68,936 - PP_0058 0.57 -4.2
68,964 - PP_0058 0.61 +0.3
68,977 + PP_0058 0.62 -3.7
69,071 - PP_0058 0.74 -3.0
69,071 - PP_0058 0.74 +0.0
69,121 + PP_0058 0.81 -0.6
69,122 - PP_0058 0.81 -1.8
69,139 + PP_0058 0.83 -2.9
69,140 - PP_0058 0.83 -3.0
69,220 + -1.6
69,258 - -2.3
69,258 - -1.0
69,268 - -1.8

Or see this region's nucleotide sequence