Strain Fitness in Pseudomonas putida KT2440 around PP_5724

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
5,968,135	-				-0.6
5,968,228	-				-0.9
5,968,283	+		PP_5723	0.20	+0.0
5,968,283	+		PP_5723	0.20	+0.2
5,968,284	-				+3.3
5,968,284	-		PP_5723	0.20	-1.1
5,968,470	+		PP_5723	0.72	-0.6
5,968,471	-		PP_5723	0.72	-0.5
5,968,471	-		PP_5723	0.72	+0.2
5,968,557	+				+0.2
5,968,557	+				-1.5
5,968,772	-		PP_5235	0.66	-0.7
5,968,881	+				-1.4
5,968,889	-				-0.6
5,968,889	-				-0.2
5,968,902	+		PP_5724	0.11	-0.1
5,968,902	+		PP_5724	0.11	-0.1
5,968,903	-		PP_5724	0.11	-1.1
5,968,973	+		PP_5724	0.31	-1.4
5,968,974	-		PP_5724	0.31	+0.0
5,968,974	-		PP_5724	0.31	-0.6
5,968,974	-		PP_5724	0.31	-1.9
5,969,154	+		PP_5724	0.82	-1.2
5,969,154	+		PP_5724	0.82	+0.0
5,969,155	-		PP_5724	0.82	-3.0
5,969,202	+				+0.1
5,969,202	+				-0.0
5,969,203	-				-1.0
5,969,203	-				+1.0
5,969,278	+				+0.2
5,969,278	+				+0.1
5,969,278	+				+0.1
5,969,279	-				+0.0
5,969,279	-				+0.2
5,969,279	-				+0.3
5,969,279	-				-0.3
5,969,328	+				-1.2
5,969,549	+		PP_5236	0.18	+0.2
5,969,550	-		PP_5236	0.18	+1.2
5,969,735	+		PP_5236	0.27	-0.1
5,969,780	+		PP_5236	0.29	-0.7
5,969,804	+		PP_5236	0.30	-0.4
5,969,846	+		PP_5236	0.32	-0.7
5,969,846	+		PP_5236	0.32	+0.4
5,969,846	+		PP_5236	0.32	+0.9
5,969,847	-		PP_5236	0.32	-0.0
5,969,847	-		PP_5236	0.32	+0.1
5,969,847	-		PP_5236	0.32	-1.0
5,969,847	-		PP_5236	0.32	+0.8
5,969,847	-		PP_5236	0.32	+0.2
5,969,847	-		PP_5236	0.32	-0.5
5,969,894	+		PP_5236	0.34	-0.9
5,969,894	+		PP_5236	0.34	+0.1
5,969,895	-		PP_5236	0.34	-1.4
5,969,900	+		PP_5236	0.34	-0.1
5,970,010	+		PP_5236	0.40	-0.9
5,970,010	+		PP_5236	0.40	-0.8
5,970,010	+		PP_5236	0.40	+1.8
5,970,010	+		PP_5236	0.40	+0.2
5,970,010	+		PP_5236	0.40	-1.0
5,970,011	-		PP_5236	0.40	+0.5
5,970,011	-		PP_5236	0.40	-0.1