Strain Fitness in Pseudomonas putida KT2440 around PP_5046

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
5,751,079	-		PP_5045	0.67	-2.7
5,751,178	-		PP_5045	0.74	-1.9
5,751,178	-		PP_5045	0.74	-2.8
5,751,320	+		PP_5045	0.83	-2.3
5,751,568	-				-0.8
5,751,610	-				-1.0
5,751,661	+				-1.4
5,751,662	-				-1.8
5,751,662	-				+0.3
5,751,662	-				-0.6
5,751,662	-				-0.8
5,751,723	-				-1.4
5,751,772	-				+0.6
5,751,804	+				-1.8
5,751,835	+				+0.1
5,751,836	-				+0.1
5,751,836	-				-0.2
5,751,892	-				-1.5
5,751,892	-				-0.4
5,752,013	+				+1.6
5,753,546	+				+0.6
5,753,662	-				-0.2
5,753,762	-				+0.4
5,753,804	+				-0.8
5,753,804	+				-2.1
5,753,804	+				-0.6
5,753,892	+				-1.6
5,753,892	+				+1.4
5,753,892	+				-0.3
5,753,893	-				-0.0
5,754,050	+		PP_5047	0.23	+2.8
5,754,051	-		PP_5047	0.23	+0.4
5,754,092	-		PP_5047	0.26	-1.9
5,754,274	+		PP_5047	0.43	-1.1
5,754,312	+		PP_5047	0.47	-1.4
5,754,313	-		PP_5047	0.47	+0.1
5,754,313	-		PP_5047	0.47	-0.3
5,754,407	+		PP_5047	0.55	-1.0