Strain Fitness in Pseudomonas putida KT2440 around PP_4393

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
4,983,828	-				+0.5
4,983,833	+				+0.0
4,983,833	+				+1.4
4,983,833	+				+0.1
4,983,833	+				-0.4
4,983,834	-				+0.9
4,983,834	-				-0.6
4,983,834	-				+0.6
4,983,873	+				-0.0
4,983,874	-				+0.2
4,983,874	-				-0.3
4,983,874	-				+0.2
4,983,874	-				+0.7
4,983,885	+				-1.2
4,983,885	+				-2.1
4,983,886	-				-1.4
4,983,966	+		PP_4392	0.11	-2.9
4,983,967	-		PP_4392	0.11	-2.0
4,983,967	-		PP_4392	0.11	-1.1
4,984,032	+		PP_4392	0.19	-1.0
4,984,032	+		PP_4392	0.19	+0.6
4,984,083	+		PP_4392	0.25	-0.4
4,984,083	+		PP_4392	0.25	+1.1
4,984,084	-		PP_4392	0.26	-0.6
4,984,084	-		PP_4392	0.26	-0.8
4,984,084	-		PP_4392	0.26	-0.9
4,984,084	-		PP_4392	0.26	-0.5
4,984,084	-		PP_4392	0.26	-1.9
4,984,174	-		PP_4392	0.36	-0.7
4,984,455	+		PP_4392	0.70	-1.4
4,984,456	-		PP_4392	0.71	+0.1
4,984,615	-		PP_4392	0.90	+0.7
4,984,615	-		PP_4392	0.90	-0.4
4,984,615	-		PP_4392	0.90	+0.3
4,984,615	-		PP_4392	0.90	-2.2
4,984,615	-		PP_4392	0.90	-1.1
4,984,615	-		PP_4392	0.90	-0.8
4,984,621	+				-1.3
4,984,622	-				+0.1
4,984,687	+				-3.1
4,984,693	+				+0.2
4,984,693	+				-0.6
4,984,694	-				-1.4
4,984,700	+				-1.3
4,984,701	-				-0.9
4,984,701	-				+0.1
4,984,877	+		PP_4393	0.13	-0.6
4,984,877	+		PP_4393	0.13	-1.2
4,984,877	+		PP_4393	0.13	-0.1
4,984,877	+		PP_4393	0.13	-0.1
4,984,933	-		PP_4393	0.19	-1.2
4,984,937	+		PP_4393	0.20	-1.2
4,984,937	+		PP_4393	0.20	+0.3
4,984,937	+				+0.6
4,984,937	+		PP_4393	0.20	-1.4
4,984,937	+		PP_4393	0.20	-0.9
4,984,937	+				-0.0
4,984,937	+		PP_4393	0.20	+0.6
4,984,937	+		PP_4393	0.20	-0.6
4,984,938	-		PP_4393	0.20	-0.7
4,984,940	-		PP_4393	0.20	+0.2
4,984,940	-		PP_4393	0.20	-0.9
4,985,029	+		PP_4393	0.30	-0.9
4,985,030	-		PP_4393	0.30	+0.6
4,985,076	+		PP_4393	0.35	-2.0
4,985,077	-		PP_4393	0.35	-0.2
4,985,284	+		PP_4393	0.57	-1.2
4,985,285	-		PP_4393	0.57	+1.5
4,985,553	+		PP_4393	0.86	-1.0
4,985,553	+		PP_4393	0.86	-0.2
4,985,553	+		PP_4393	0.86	+0.4
4,985,554	-		PP_4393	0.86	+0.3
4,985,927	+		PP_4394	0.22	-1.7
4,985,927	+		PP_4394	0.22	-1.5
4,985,927	+		PP_4394	0.22	-2.7
4,985,927	+		PP_4394	0.22	-2.4
4,985,928	-		PP_4394	0.22	-1.9
4,985,928	-		PP_4394	0.22	-2.1
4,986,072	+		PP_4394	0.42	-0.3
4,986,072	+		PP_4394	0.42	-0.7
4,986,102	+		PP_4394	0.46	-0.9
4,986,102	+		PP_4394	0.46	-1.1
4,986,505	+				-2.3
4,986,505	+				-1.4
4,986,505	+				-0.3
4,986,505	+				-1.5
4,986,505	+				-0.8
4,986,505	+				-3.5
4,986,505	+				-3.4
4,986,506	-				-2.6
4,986,506	-				-0.5
4,986,506	-				-0.7
4,986,506	-				-3.4
4,986,506	-				-2.3
4,986,506	-				-2.5
4,986,509	+				+0.3
4,986,509	+				-0.3
4,986,509	+				-0.5
4,986,510	-				-0.7
4,986,510	-				-0.9
4,986,510	-				-1.2
4,986,510	-				+0.7
4,986,510	-				-0.9
4,986,510	-				+0.2
4,986,554	+				-0.7
4,986,555	-				-0.1
4,986,614	-				-2.2
4,986,657	+				+0.2