Strain Fitness in Pseudomonas putida KT2440 around PP_4355

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
4,946,910	+		PP_4353	0.42	-3.1
4,946,911	-		PP_4353	0.42	-1.8
4,946,985	+		PP_4353	0.52	-0.2
4,947,035	+		PP_4353	0.58	-2.0
4,947,147	-		PP_4353	0.73	-3.5
4,947,147	-		PP_4353	0.73	-2.1
4,947,226	+		PP_4353	0.83	-1.8
4,947,226	+		PP_4353	0.83	-1.7
4,947,226	+		PP_4353	0.83	-3.7
4,947,227	-		PP_4353	0.83	-0.8
4,947,227	-		PP_4353	0.83	-1.1
4,947,373	+				+0.8
4,947,373	+				-3.3
4,947,373	+				-1.2
4,947,374	-				-3.5
4,947,374	-				-1.8
4,947,395	+		PP_4354	0.10	-0.7
4,947,410	+		PP_4354	0.16	-2.1
4,947,410	+		PP_4354	0.16	-1.5
4,947,411	-		PP_4354	0.16	-2.6
4,947,774	+		PP_4355	0.15	-2.6
4,947,775	-		PP_4355	0.15	-2.7
4,948,395	+				-1.7
4,948,396	-				-3.0
4,948,396	-				-2.6
4,948,396	-				-1.2
4,948,396	-				-0.3
4,948,518	+		PP_4356	0.24	-1.3
4,948,518	+		PP_4356	0.24	-3.2
4,948,547	+		PP_4356	0.31	-2.0
4,948,547	+		PP_4356	0.31	-0.9
4,948,877	+				-1.3
4,949,357	+				-2.0
4,949,357	+				+0.7
4,949,358	-				+0.0
4,949,358	-				-0.4
4,949,358	-				+0.3