Strain Fitness in Pseudomonas putida KT2440 around PP_4307

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
4,897,559	+				+0.7
4,897,559	+				-2.2
4,897,559	+				-0.6
4,897,559	+				+0.7
4,897,559	+				-0.9
4,897,560	-				+0.3
4,897,560	-				-1.3
4,897,560	-				+0.2
4,897,560	-				-0.6
4,897,560	-				-0.1
4,897,673	-				-0.4
4,897,673	-				-1.4
4,897,673	-				+0.1
4,897,673	-				+0.1
4,897,805	-		PP_4306	0.23	-1.9
4,897,868	-		PP_4306	0.29	-0.1
4,897,868	-		PP_4306	0.29	-0.8
4,897,876	+		PP_4306	0.30	-3.0
4,897,877	-		PP_4306	0.30	-0.2
4,897,921	+		PP_4306	0.35	-0.4
4,898,054	+		PP_4306	0.49	-0.4
4,898,054	+		PP_4306	0.49	-1.9
4,898,055	-		PP_4306	0.49	+0.1
4,898,055	-		PP_4306	0.49	-0.5
4,898,055	-		PP_4306	0.49	-0.9
4,898,055	-		PP_4306	0.49	-1.1
4,898,170	+		PP_4306	0.61	-2.1
4,898,170	+		PP_4306	0.61	-0.7
4,898,248	+		PP_4306	0.69	-2.2
4,898,546	+				-0.7
4,898,547	-				-0.6
4,898,785	+		PP_4307	0.26	+0.5
4,898,785	+		PP_4307	0.26	-1.0
4,898,785	+		PP_4307	0.26	+1.2
4,898,785	+		PP_4307	0.26	+0.4
4,898,785	+		PP_4307	0.26	+0.9
4,898,785	+		PP_4307	0.26	-1.0
4,898,786	-		PP_4307	0.26	-1.2
4,898,786	-		PP_4307	0.26	-1.8
4,898,786	-		PP_4307	0.26	+0.5
4,898,786	-		PP_4307	0.26	+0.4
4,898,786	-		PP_4307	0.26	+0.4
4,898,786	-		PP_4307	0.26	-0.1
4,898,786	-		PP_4307	0.26	-0.5
4,898,786	-		PP_4307	0.26	-2.6
4,898,786	-		PP_4307	0.26	+1.1
4,898,789	+		PP_4307	0.26	-0.4
4,898,789	+		PP_4307	0.26	+0.0
4,898,789	+		PP_4307	0.26	+0.1
4,898,789	+		PP_4307	0.26	+0.0
4,898,789	+		PP_4307	0.26	+0.3
4,898,789	+		PP_4307	0.26	+0.0
4,898,789	+		PP_4307	0.26	-0.6
4,898,789	+		PP_4307	0.26	-2.2
4,898,789	+		PP_4307	0.26	+0.4
4,898,789	+		PP_4307	0.26	-1.2
4,898,790	-		PP_4307	0.27	-0.4
4,898,790	-		PP_4307	0.27	+0.7
4,898,790	-		PP_4307	0.27	+0.5
4,898,790	-		PP_4307	0.27	-0.4
4,898,790	-		PP_4307	0.27	+0.7
4,898,790	-		PP_4307	0.27	-0.4
4,898,790	-		PP_4307	0.27	-0.0
4,898,790	-		PP_4307	0.27	-1.0
4,898,790	-		PP_4307	0.27	-0.4
4,898,790	-		PP_4307	0.27	-0.0
4,898,812	-		PP_4307	0.29	+0.4
4,899,014	+		PP_4307	0.51	+1.0
4,899,014	+		PP_4307	0.51	-0.7
4,899,015	-		PP_4307	0.51	-1.6
4,899,015	-		PP_4307	0.51	+0.3
4,899,027	+		PP_4307	0.52	+0.6
4,899,028	-		PP_4307	0.52	-1.3
4,899,028	-		PP_4307	0.52	+0.3
4,899,167	+		PP_4307	0.67	-0.2
4,899,167	+		PP_4307	0.67	+0.0
4,899,168	-		PP_4307	0.67	-0.3
4,899,168	-		PP_4307	0.67	+0.1
4,899,203	+		PP_4307	0.71	-0.4
4,899,203	+		PP_4307	0.71	-1.6
4,899,204	-		PP_4307	0.71	-0.1
4,899,344	-		PP_4307	0.86	-0.1
4,899,344	-		PP_4307	0.86	+0.3
4,899,499	-				+0.6
4,899,563	+				+0.3
4,899,563	+				-3.0
4,899,563	+				+1.2
4,899,563	+				-1.2
4,899,564	-				+0.3
4,899,564	-				-1.1
4,899,576	-				+0.9
4,899,601	+				-0.6
4,899,624	+				+0.3
4,899,753	-		PP_4308	0.34	+1.1
4,899,754	+		PP_4308	0.35	-0.0
4,899,754	+		PP_4308	0.35	+0.4
4,899,755	-		PP_4308	0.35	+0.9
4,899,785	+		PP_4308	0.42	-0.4
4,900,088	+				-2.2
4,900,132	-				+1.0
4,900,196	+				+0.6
4,900,262	+				+0.2
4,900,300	-				+0.2
4,900,398	+				+0.5
4,900,399	-				+0.9