Strain Fitness in Pseudomonas putida KT2440 around PP_3773

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
4,299,365	+				-0.8
4,299,365	+				-0.5
4,299,365	+				-0.1
4,299,369	+				+0.4
4,299,369	+				+0.1
4,299,381	+				-0.4
4,299,392	+				-0.8
4,299,392	+				+0.2
4,300,352	+		PP_3773	0.20	-0.9
4,300,379	+		PP_3773	0.28	-1.1
4,300,601	+		PP_3773	0.88	-3.5
4,300,602	-		PP_3773	0.89	-0.7
4,300,650	-				+0.2
4,300,650	-				+0.3
4,300,672	-				+0.5
4,300,703	-				-0.1
4,300,703	-				+0.9
4,300,703	-				-1.0
4,300,706	+				-1.2
4,300,743	+				+0.5
4,300,744	-				-1.3
4,300,744	-				+0.6
4,300,744	-				+0.8
4,300,793	+				-0.6
4,300,794	-				+0.2
4,300,802	+				-1.5
4,300,802	+				+0.2
4,300,802	+				+0.0
4,300,843	+				-1.2
4,300,843	+				+0.2
4,300,844	-				-1.4
4,300,844	-				+1.4
4,300,847	+				+0.0
4,300,847	+				+1.0
4,300,848	-				+1.0
4,301,152	+		PP_3774	0.47	+0.2
4,301,152	+		PP_3774	0.47	-1.0
4,301,152	+		PP_3774	0.47	-0.3
4,301,152	+		PP_3774	0.47	+0.5
4,301,153	-		PP_3774	0.47	+0.3
4,301,324	-		PP_3774	0.72	+0.1
4,301,324	-				-0.3
4,301,424	+		PP_3774	0.87	+1.0
4,301,424	+		PP_3774	0.87	-0.3
4,301,425	-		PP_3774	0.87	-0.1
4,301,425	-		PP_3774	0.87	-1.5
4,301,625	+				-0.4
4,301,626	-				-0.4
4,301,634	+				-0.3
4,301,634	+				+0.3