Strain Fitness in Pseudomonas putida KT2440 around PP_3427

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
3,880,347	+		PP_3426	0.69	+0.4
3,880,347	+		PP_3426	0.69	-0.2
3,880,348	-		PP_3426	0.69	+0.9
3,880,348	-		PP_3426	0.69	-0.1
3,880,446	+		PP_3426	0.72	+0.2
3,880,447	-		PP_3426	0.72	-0.2
3,880,461	+		PP_3426	0.72	-1.9
3,880,462	-		PP_3426	0.72	+0.1
3,880,494	+		PP_3426	0.73	-0.0
3,880,645	-		PP_3426	0.78	-0.5
3,880,645	-		PP_3426	0.78	+0.2
3,880,693	-		PP_3426	0.79	+1.0
3,880,806	-		PP_3426	0.83	+0.4
3,880,834	+		PP_3426	0.84	-0.9
3,880,834	+		PP_3426	0.84	+0.5
3,880,834	+		PP_3426	0.84	+0.8
3,880,835	-		PP_3426	0.84	-0.6
3,880,835	-		PP_3426	0.84	-1.2
3,880,945	+		PP_3426	0.87	-0.5
3,881,867	+		PP_3427	0.37	-0.6
3,882,114	+		PP_3427	0.55	-0.6
3,882,367	+		PP_3427	0.72	-0.8
3,882,367	+		PP_3427	0.72	+0.7
3,882,367	+		PP_3427	0.72	-1.2
3,882,367	+		PP_3427	0.72	-0.8
3,882,449	+		PP_3427	0.78	-1.0
3,882,449	+		PP_3427	0.78	-1.4
3,882,450	-		PP_3427	0.78	-0.1
3,882,450	-		PP_3427	0.78	+0.7
3,882,450	-		PP_3427	0.78	-1.9
3,882,598	+		PP_3427	0.89	-2.4
3,882,608	+		PP_3427	0.89	-2.0
3,882,615	+		PP_3427	0.90	-3.1
3,882,615	+		PP_3427	0.90	-1.6
3,882,615	+		PP_3427	0.90	-1.4
3,882,642	+				-0.9
3,882,704	+				+0.9
3,882,851	+				-0.8
3,882,852	-				+0.7
3,882,864	-				+0.1
3,882,932	-				-1.4
3,883,001	-				-0.1
3,883,173	+		PP_3428	0.18	-1.0
3,883,173	+		PP_3428	0.18	+0.9
3,883,173	+		PP_3428	0.18	-2.4
3,883,173	+		PP_3428	0.18	-0.5
3,883,208	-		PP_3428	0.21	-0.7
3,883,225	+		PP_3428	0.23	+0.3
3,883,225	+		PP_3428	0.23	+0.6
3,883,439	-		PP_3428	0.43	+0.8
3,883,439	-		PP_3428	0.43	-0.0
3,883,471	+		PP_3428	0.46	-0.3
3,883,472	-		PP_3428	0.46	+0.3
3,883,472	-		PP_3428	0.46	-1.6
3,883,535	-		PP_3428	0.52	+0.8
3,883,535	-				-0.5
3,883,628	+		PP_3428	0.61	+0.1
3,883,628	+		PP_3428	0.61	+0.3
3,883,721	-		PP_3428	0.70	-0.2
3,883,727	+		PP_3428	0.71	-0.6
3,883,727	+		PP_3428	0.71	-1.8
3,883,728	-		PP_3428	0.71	+0.2