Strain Fitness in Pseudomonas putida KT2440 around PP_3247

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
3,679,909	+				-2.5
3,679,909	+				-3.3
3,679,958	-				-3.0
3,680,049	+		PP_3245	0.33	-2.9
3,680,102	+		PP_3245	0.52	-3.7
3,680,266	+				-1.0
3,680,266	+				-1.2
3,680,267	-				-0.6
3,680,319	+		PP_3246	0.15	+0.6
3,680,319	+		PP_3246	0.15	+0.9
3,680,319	+		PP_3246	0.15	-0.1
3,680,319	+		PP_3246	0.15	+0.2
3,680,319	+		PP_3246	0.15	-0.9
3,680,319	+		PP_3246	0.15	-0.3
3,680,319	+		PP_3246	0.15	+0.7
3,680,320	-		PP_3246	0.16	-1.2
3,680,320	-		PP_3246	0.16	-0.3
3,680,320	-		PP_3246	0.16	+0.2
3,680,320	-		PP_3246	0.16	-0.2
3,680,497	-		PP_3246	0.53	-1.4
3,680,508	+		PP_3246	0.56	-0.4
3,680,508	+		PP_3246	0.56	-0.3
3,680,508	+		PP_3246	0.56	+0.0
3,680,508	+		PP_3246	0.56	+0.1
3,680,508	+		PP_3246	0.56	+0.0
3,680,508	+		PP_3246	0.56	+0.1
3,680,508	+		PP_3246	0.56	-0.5
3,680,508	+		PP_3246	0.56	-0.4
3,680,508	+		PP_3246	0.56	+0.2
3,680,508	+		PP_3246	0.56	-0.8
3,680,508	+		PP_3246	0.56	-0.9
3,680,509	-		PP_3246	0.56	-0.4
3,680,509	-		PP_3246	0.56	-1.1
3,680,509	-		PP_3246	0.56	+0.1
3,680,509	-		PP_3246	0.56	-1.5
3,680,509	-		PP_3246	0.56	+0.2
3,680,509	-		PP_3246	0.56	+1.6
3,680,509	-		PP_3246	0.56	-0.4
3,680,512	+		PP_3246	0.57	-1.3
3,680,512	+		PP_3246	0.57	+0.5
3,680,512	+		PP_3246	0.57	+0.8
3,680,513	-		PP_3246	0.57	+0.3
3,680,513	-		PP_3246	0.57	+0.3
3,680,656	-		PP_3246	0.87	+0.3
3,680,853	-		PP_3247	0.11	+0.5
3,680,853	-		PP_3247	0.11	+0.7
3,680,931	+		PP_3247	0.19	+1.1
3,680,950	-		PP_3247	0.21	-1.8
3,681,062	+		PP_3247	0.34	-1.5
3,681,063	-				-0.3
3,681,658	+				+0.6
3,681,659	-				+0.2
3,681,686	+				+0.8
3,681,687	-				+0.3
3,681,687	-				+0.1
3,681,704	+				-0.5
3,681,704	+				+0.3
3,681,705	-				-0.5
3,681,708	+				+0.4
3,681,709	-				+0.7
3,681,709	-				+0.3
3,681,802	+				+1.3
3,681,803	-				+0.8
3,681,821	+				-0.8
3,681,822	-				+0.5
3,681,836	-				+0.3
3,681,836	-				-1.0
3,681,981	+		PP_3248	0.17	+0.3
3,681,982	-		PP_3248	0.17	+0.5
3,682,018	-		PP_3248	0.21	-0.4
3,682,018	-		PP_3248	0.21	-0.7
3,682,331	+		PP_3248	0.57	+0.5
3,682,331	+		PP_3248	0.57	-0.6
3,682,331	+		PP_3248	0.57	+0.1
3,682,332	-		PP_3248	0.57	-0.9
3,682,332	-		PP_3248	0.57	+0.1
3,682,637	+				-2.0
3,682,637	+				-0.0
3,682,641	-				+0.4