Strain Fitness in Pseudomonas putida KT2440 around PP_3243

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
3,677,613	+				+0.8
3,677,614	-		PP_3242	0.39	-0.6
3,677,711	-		PP_3242	0.45	-0.4
3,677,711	-		PP_3242	0.45	+0.3
3,677,757	+		PP_3242	0.48	+1.3
3,677,757	+		PP_3242	0.48	+0.1
3,677,758	-		PP_3242	0.48	+0.1
3,677,814	+		PP_3242	0.52	-0.4
3,677,814	+		PP_3242	0.52	-0.2
3,677,814	+		PP_3242	0.52	+0.1
3,678,056	+		PP_3242	0.67	+0.1
3,678,056	+		PP_3242	0.67	+0.8
3,678,057	-		PP_3242	0.67	+0.2
3,678,057	-		PP_3242	0.67	-0.1
3,678,057	-		PP_3242	0.67	+0.1
3,678,057	-		PP_3242	0.67	-0.4
3,678,163	-		PP_3242	0.74	-1.5
3,678,312	-		PP_3242	0.84	+0.8
3,678,349	+		PP_3242	0.86	+0.3
3,678,350	-		PP_3242	0.86	+0.0
3,678,458	+				+0.7
3,678,736	+		PP_3243	0.25	+0.4
3,678,789	+		PP_3243	0.35	-0.4
3,678,959	+		PP_3243	0.69	+0.3
3,678,959	+		PP_3243	0.69	-0.9
3,679,103	+				-3.3
3,679,138	-				-1.8
3,679,163	+				-2.2
3,679,164	-				-4.0
3,679,184	+				-2.2
3,679,184	+				-3.8
3,679,184	+				-3.7
3,679,184	+				-4.8
3,679,185	-				-4.1
3,679,185	-				-3.7
3,679,254	-		PP_3244	0.17	-3.2
3,679,254	-		PP_3244	0.17	-3.1
3,679,254	-		PP_3244	0.17	-3.1
3,679,590	-		PP_3244	0.64	-3.5
3,679,650	+		PP_3244	0.72	-2.0
3,679,651	-		PP_3244	0.72	-2.9
3,679,909	+				-2.5
3,679,909	+				-3.3
3,679,958	-				-3.0
3,680,049	+		PP_3245	0.33	-2.9
3,680,102	+		PP_3245	0.52	-3.7