Strain Fitness in Pseudomonas putida KT2440 around PP_2758

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
3,141,222	+		PP_2757	0.14	-3.2
3,141,222	+		PP_2757	0.14	+1.2
3,141,222	+		PP_2757	0.14	+0.8
3,141,364	+		PP_2757	0.29	+0.2
3,141,573	+		PP_2757	0.50	+0.4
3,141,573	+		PP_2757	0.50	+0.5
3,141,574	-		PP_2757	0.50	+0.8
3,141,620	-		PP_2757	0.55	-1.9
3,141,620	-		PP_2757	0.55	+0.2
3,141,828	+		PP_2757	0.77	-0.4
3,141,828	+		PP_2757	0.77	+0.6
3,141,828	+		PP_2757	0.77	-0.7
3,141,828	+		PP_2757	0.77	+0.3
3,141,829	-		PP_2757	0.77	-1.3
3,142,194	+		PP_2758	0.14	-1.1
3,142,194	+		PP_2758	0.14	+0.2
3,142,194	+		PP_2758	0.14	-1.2
3,142,194	+		PP_2758	0.14	+0.6
3,142,195	-		PP_2758	0.14	-1.6
3,142,195	-		PP_2758	0.14	+0.2
3,142,247	+		PP_2758	0.19	-1.0
3,142,248	-		PP_2758	0.19	+0.9
3,142,287	+		PP_2758	0.23	-1.1
3,142,390	+		PP_2758	0.33	-1.3
3,142,390	+		PP_2758	0.33	-1.9
3,142,391	-		PP_2758	0.33	-0.3
3,142,599	-		PP_2758	0.53	+0.2
3,142,599	-		PP_2758	0.53	-1.6
3,142,599	-		PP_2758	0.53	-1.2
3,142,751	+		PP_2758	0.68	-2.1
3,142,751	+		PP_2758	0.68	-0.8
3,142,844	-		PP_2758	0.77	-1.2
3,142,853	+		PP_2758	0.78	-0.2
3,142,854	-		PP_2758	0.78	-1.9
3,143,212	-				-0.0
3,143,461	+		PP_2759	0.25	+0.4
3,143,461	+		PP_2759	0.25	-0.5
3,143,665	+		PP_2759	0.38	-3.1
3,143,677	+		PP_2759	0.39	-0.6