Strain Fitness in Pseudomonas putida KT2440 around PP_1727

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
1,926,301	-		PP_1726	0.47	-0.7
1,926,301	-		PP_1726	0.47	-1.2
1,926,372	+		PP_1726	0.54	-0.3
1,926,372	+		PP_1726	0.54	-0.5
1,926,372	+		PP_1726	0.54	-1.4
1,926,373	-		PP_1726	0.54	-0.8
1,926,373	-		PP_1726	0.54	+0.7
1,926,531	+		PP_1726	0.69	+0.2
1,926,531	+		PP_1726	0.69	+0.3
1,926,531	+		PP_1726	0.69	-0.4
1,926,532	-		PP_1726	0.69	-0.3
1,926,532	-		PP_1726	0.69	-1.1
1,926,532	-		PP_1726	0.69	-1.7
1,926,532	-		PP_1726	0.69	-0.6
1,926,678	+		PP_1726	0.82	+1.1
1,926,910	+				-0.6
1,926,972	+				+0.5
1,926,972	+				-1.8
1,926,973	-				-1.0
1,926,999	-				-1.0
1,926,999	-				+0.3
1,927,028	+				+0.1
1,927,028	+				+1.4
1,927,029	-				+0.1
1,927,029	-				+0.1
1,927,029	-				+1.8
1,927,035	+				+0.0
1,927,035	+				+0.6
1,927,035	+				+0.8
1,927,035	+				+1.2
1,927,036	-				+1.2
1,927,036	-				+0.2
1,927,036	-				-1.4
1,927,036	-				-1.1
1,927,127	+				-0.9
1,927,127	+				-1.3
1,927,128	-				+0.6
1,927,128	-				+0.6
1,927,139	-				+1.4
1,927,170	+				+0.3
1,927,179	+				-0.5
1,927,179	+				+0.4
1,927,179	+				+0.8
1,927,179	+				+0.2
1,927,179	+				-0.8
1,927,180	-				+0.1
1,927,184	-				+1.1
1,927,184	-				+0.8
1,927,424	+		PP_1727	0.32	+0.1
1,927,425	-		PP_1727	0.32	+1.9
1,927,425	-		PP_1727	0.32	+0.6
1,927,425	-		PP_1727	0.32	-0.1
1,927,487	-		PP_1727	0.41	+0.6
1,927,487	-		PP_1727	0.41	+0.4
1,927,614	-		PP_1727	0.59	+1.1
1,927,614	-		PP_1727	0.59	+0.7
1,927,625	+		PP_1727	0.61	+0.0
1,927,640	+		PP_1727	0.63	+0.4
1,927,691	+		PP_1727	0.70	+0.1
1,927,692	-		PP_1727	0.70	+0.7
1,927,704	-		PP_1727	0.72	+1.0
1,927,810	+		PP_1727	0.86	-0.5
1,927,811	-		PP_1727	0.87	+0.0
1,927,862	+				-0.3
1,927,863	-				+0.4
1,927,940	-				+0.2
1,928,168	+		PP_1728	0.11	-0.4
1,928,169	-		PP_1728	0.11	-0.2
1,928,169	-		PP_1728	0.11	-1.2
1,928,293	+		PP_1728	0.16	+0.6
1,928,294	-		PP_1728	0.17	+0.1
1,928,330	+		PP_1728	0.18	-0.4
1,928,330	+		PP_1728	0.18	+0.3
1,928,330	+		PP_1728	0.18	+0.1
1,928,331	-		PP_1728	0.18	+0.3
1,928,331	-		PP_1728	0.18	-0.7
1,928,331	-		PP_1728	0.18	+1.1
1,928,331	-		PP_1728	0.18	-0.0
1,928,416	+		PP_1728	0.22	-0.9
1,928,416	+				+0.5
1,928,416	+		PP_1728	0.22	-1.9
1,928,417	-		PP_1728	0.22	-0.2
1,928,417	-				+1.7
1,928,888	-		PP_1728	0.44	+0.2
1,928,888	-		PP_1728	0.44	-0.5