Strain Fitness in Pseudomonas putida KT2440 around PP_1429

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
1,627,528	+		PP_1427	0.44	+0.9
1,627,528	+		PP_1427	0.44	+0.6
1,627,718	+		PP_1427	0.76	+0.8
1,627,719	-		PP_1427	0.77	+0.0
1,627,817	+				+1.8
1,627,817	+				+1.4
1,627,818	-				+0.7
1,627,821	+				+0.9
1,627,821	+				+0.5
1,627,821	+				+0.9
1,627,821	+				-0.2
1,627,822	-				+0.7
1,627,822	-				+1.2
1,627,822	-				+0.9
1,627,822	-				+0.2
1,627,822	-				-0.1
1,627,822	-				+1.6
1,628,196	+		PP_1428	0.52	+0.8
1,628,196	+		PP_1428	0.52	-2.5
1,628,196	+		PP_1428	0.52	-2.6
1,628,196	+		PP_1428	0.52	-1.2
1,628,197	-		PP_1428	0.52	-1.8
1,628,197	-		PP_1428	0.52	-1.5
1,628,446	+				-0.9
1,628,480	+				+0.2
1,628,481	-				-4.3
1,628,481	-				-1.4
1,628,481	-				-0.7
1,628,481	-				-1.6
1,628,501	+				-0.1
1,628,620	+		PP_1429	0.13	-1.2
1,628,620	+		PP_1429	0.13	+0.1
1,628,621	-		PP_1429	0.13	-1.2
1,628,621	-		PP_1429	0.13	-2.1
1,628,621	-		PP_1429	0.13	-1.3
1,628,621	-		PP_1429	0.13	+0.2
1,628,639	-		PP_1429	0.15	+0.3
1,628,854	+		PP_1429	0.38	-1.7
1,628,910	+		PP_1429	0.43	-0.7
1,628,910	+		PP_1429	0.43	-2.2
1,629,192	-		PP_1429	0.73	-0.9
1,629,235	+		PP_1429	0.77	+0.5
1,629,235	+		PP_1429	0.77	-1.3
1,629,235	+		PP_1429	0.77	+0.6
1,629,236	-		PP_1429	0.77	-1.7
1,629,236	-		PP_1429	0.77	-0.8
1,629,236	-		PP_1429	0.77	-0.2
1,629,315	-		PP_1429	0.85	-0.4
1,629,315	-		PP_1429	0.85	-1.9
1,629,348	+		PP_1429	0.89	-1.6
1,629,495	+				-3.5
1,629,496	-				+0.1
1,629,496	-				+0.7
1,629,496	-				-0.4
1,629,550	-				-1.0
1,629,552	-				-2.1
1,629,608	+				+0.3
1,629,608	+				+0.5
1,629,609	-				+0.4
1,629,632	+				-0.3
1,629,633	-				+0.5
1,629,633	-				-0.6
1,629,633	-				+0.3
1,629,633	-				-2.3
1,629,657	+				+0.8
1,629,658	-				+0.7
1,629,658	-				+0.9
1,629,658	-				+0.0
1,629,658	-				-1.5
1,629,661	+				+0.2
1,629,661	+				-2.4
1,629,661	+				-2.1
1,629,661	+				-1.1
1,629,661	+				-0.2
1,629,661	+				+1.0
1,629,662	-				-1.3
1,629,662	-				-0.5
1,629,662	-				+0.8
1,629,662	-				+0.8
1,629,662	-				+0.4
1,629,662	-				+0.2
1,629,697	+				+0.0
1,629,697	+				+0.2
1,629,698	-				-1.1
1,629,780	-		PP_1430	0.13	-0.5
1,629,780	-		PP_1430	0.13	-0.6
1,629,963	+		PP_1430	0.25	-1.4
1,629,963	+		PP_1430	0.25	+0.2
1,629,963	+		PP_1430	0.25	-1.9
1,629,964	-		PP_1430	0.25	-1.1
1,630,205	+		PP_1430	0.42	-0.8
1,630,205	+		PP_1430	0.42	-0.2
1,630,206	-		PP_1430	0.42	+0.3
1,630,245	+		PP_1430	0.44	-0.3
1,630,245	+		PP_1430	0.44	-0.1
1,630,245	+		PP_1430	0.44	+0.0
1,630,245	+		PP_1430	0.44	-0.7
1,630,245	+		PP_1430	0.44	-1.3
1,630,245	+		PP_1430	0.44	+0.5
1,630,245	+		PP_1430	0.44	-0.4
1,630,246	-		PP_1430	0.44	-1.8
1,630,246	-		PP_1430	0.44	-0.6
1,630,246	-		PP_1430	0.44	+0.2
1,630,246	-		PP_1430	0.44	+0.2
1,630,246	-		PP_1430	0.44	-0.8
1,630,246	-		PP_1430	0.44	-0.4
1,630,246	-		PP_1430	0.44	-1.9
1,630,246	-		PP_1430	0.44	+0.2
1,630,249	+		PP_1430	0.45	-1.5
1,630,250	-		PP_1430	0.45	-0.7
1,630,250	-		PP_1430	0.45	+0.8