Strain Fitness in Pseudomonas putida KT2440 around PP_1414

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
1,612,082	+				-0.1
1,612,082	+				+0.9
1,612,082	+				-2.0
1,612,082	+				-0.1
1,612,107	+				+0.2
1,612,107	+				+0.3
1,612,107	+				-0.6
1,612,107	+				-0.0
1,612,108	-				-1.1
1,612,108	-				+0.3
1,612,108	-				+0.8
1,612,169	+				-0.4
1,612,170	-				+0.1
1,612,170	-				+0.3
1,612,170	-				+0.5
1,612,174	-				+1.4
1,612,191	+				+1.2
1,612,276	+		PP_1413	0.10	-1.7
1,612,276	+		PP_1413	0.10	+0.1
1,612,276	+		PP_1413	0.10	+0.1
1,612,276	+		PP_1413	0.10	-0.6
1,612,276	+		PP_1413	0.10	-2.6
1,612,276	+		PP_1413	0.10	-0.8
1,612,277	-		PP_1413	0.11	+0.7
1,612,334	-		PP_1413	0.19	-0.1
1,612,418	-		PP_1413	0.31	-0.1
1,612,495	-		PP_1413	0.42	-0.1
1,612,498	+		PP_1413	0.42	-0.8
1,612,498	+		PP_1413	0.42	+0.0
1,612,499	-		PP_1413	0.43	-0.5
1,612,499	-		PP_1413	0.43	+0.7
1,612,651	-		PP_1413	0.65	-1.1
1,612,706	+		PP_1413	0.72	+0.8
1,612,706	+		PP_1413	0.72	-1.2
1,612,749	+		PP_1413	0.79	-0.2
1,612,798	+		PP_1413	0.86	-1.2
1,612,799	-		PP_1413	0.86	+0.1
1,612,997	-				-0.4
1,612,997	-				+0.2
1,613,200	+		PP_1414	0.16	-0.1
1,613,201	-		PP_1414	0.17	+0.7
1,613,217	+		PP_1414	0.17	-1.5
1,613,217	+		PP_1414	0.17	+0.2
1,613,217	+		PP_1414	0.17	+0.1
1,613,218	-		PP_1414	0.18	-1.1
1,613,322	+		PP_1414	0.24	-1.1
1,613,322	+		PP_1414	0.24	+0.3
1,613,331	+		PP_1414	0.24	-0.1
1,613,331	+				+0.4
1,613,341	+		PP_1414	0.25	-0.0
1,613,341	+		PP_1414	0.25	+0.4
1,613,342	-		PP_1414	0.25	+0.6
1,613,342	-		PP_1414	0.25	+0.5
1,613,342	-		PP_1414	0.25	-0.3
1,613,370	-		PP_1414	0.27	+0.7
1,613,523	+		PP_1414	0.36	-0.6
1,613,599	+				+0.1
1,613,599	+		PP_1414	0.40	-0.3
1,613,600	-		PP_1414	0.40	+0.1
1,613,600	-		PP_1414	0.40	+0.1
1,613,622	-		PP_1414	0.42	-2.7
1,613,743	+		PP_1414	0.49	-0.4
1,613,743	+		PP_1414	0.49	+0.1
1,613,743	+		PP_1414	0.49	-0.6
1,613,743	+		PP_1414	0.49	-0.3
1,613,744	-		PP_1414	0.49	-0.2
1,613,744	-		PP_1414	0.49	+0.7
1,613,778	+		PP_1414	0.51	-0.1
1,613,778	+		PP_1414	0.51	+1.3
1,613,779	-		PP_1414	0.51	+0.3
1,613,823	+		PP_1414	0.53	+0.5
1,613,823	+		PP_1414	0.53	-0.3
1,613,824	-		PP_1414	0.54	+0.9
1,613,824	-		PP_1414	0.54	+0.3
1,613,824	-		PP_1414	0.54	+0.7
1,613,824	-		PP_1414	0.54	+0.4
1,613,824	-		PP_1414	0.54	+0.0
1,613,824	-		PP_1414	0.54	+0.2
1,614,028	-		PP_1414	0.66	+0.3
1,614,043	-		PP_1414	0.67	+0.1
1,614,043	-		PP_1414	0.67	+0.7
1,614,043	-		PP_1414	0.67	+0.0
1,614,059	-		PP_1414	0.67	-1.2
1,614,084	-		PP_1414	0.69	-0.7
1,614,108	+		PP_1414	0.70	-0.6
1,614,109	-		PP_1414	0.70	+0.2
1,614,109	-		PP_1414	0.70	+0.3
1,614,112	+		PP_1414	0.71	-1.0
1,614,112	+		PP_1414	0.71	-1.2
1,614,112	+		PP_1414	0.71	-0.6
1,614,112	+		PP_1414	0.71	-0.1
1,614,113	-		PP_1414	0.71	+0.5
1,614,113	-		PP_1414	0.71	-2.0
1,614,113	-		PP_1414	0.71	-2.9
1,614,113	-		PP_1414	0.71	-1.1
1,614,113	-		PP_1414	0.71	-0.8
1,614,134	-		PP_1414	0.72	-0.2
1,614,445	+				-0.3
1,614,469	+				-0.0
1,614,569	+				+0.2
1,614,570	-				-0.6
1,614,570	-				+0.7
1,614,580	+				-0.0
1,614,580	+				-1.1
1,614,581	-				-0.0
1,614,609	+				+0.3
1,614,668	-				+0.2
1,614,668	-				+0.9
1,614,668	-				-0.4
1,614,668	-				-0.1
1,614,693	+				+0.8
1,614,693	+				-0.1
1,614,693	+				-0.6
1,614,693	+				+0.8
1,614,697	+				+0.7
1,614,697	+				+0.1
1,614,697	+				-0.1
1,614,698	-				-0.0
1,614,698	-				+0.3
1,614,698	-				-1.4
1,614,701	+				-0.2
1,614,701	+				-0.1
1,614,702	-				-0.7
1,614,702	-				-0.9
1,615,443	+		PP_1415	0.71	-1.4
1,615,443	+		PP_1415	0.71	-0.0
1,615,443	+				+0.4
1,615,443	+		PP_1415	0.71	+0.7
1,615,444	-		PP_1415	0.71	-0.5