Strain Fitness in Pseudomonas putida KT2440 around PP_0951

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
1,093,434	+		PP_0949	0.69	-3.2
1,093,434	+		PP_0949	0.69	-4.0
1,093,435	-		PP_0949	0.69	-3.1
1,093,554	+		PP_0949	0.83	-3.2
1,093,621	-				-1.4
1,093,717	+				-1.1
1,093,718	-				+1.3
1,093,718	-				+0.3
1,093,718	-				+0.9
1,094,277	-		PP_0951	0.32	-2.4
1,094,277	-		PP_0951	0.32	-2.3
1,094,277	-		PP_0951	0.32	-1.3
1,094,277	-		PP_0951	0.32	-2.3
1,094,277	-		PP_0951	0.32	-1.3
1,094,277	-		PP_0951	0.32	-1.5
1,094,277	-		PP_0951	0.32	-1.5
1,094,277	-		PP_0951	0.32	-1.6
1,094,277	-		PP_0951	0.32	-2.7
1,094,277	-		PP_0951	0.32	-1.7
1,094,277	-		PP_0951	0.32	-2.3
1,094,277	-		PP_0951	0.32	-1.0
1,094,277	-		PP_0951	0.32	-2.2
1,094,277	-		PP_0951	0.32	-3.3
1,094,277	-		PP_0951	0.32	-2.4
1,094,277	-		PP_0951	0.32	-2.4
1,094,277	-		PP_0951	0.32	-1.9
1,094,303	-		PP_0951	0.40	-1.8
1,094,372	-		PP_0951	0.62	-0.4
1,094,433	-		PP_0951	0.82	-1.5
1,094,459	-				-3.7
1,094,459	-				-1.1
1,094,488	-				-2.4
1,094,488	-				-1.2
1,094,488	-				-1.7
1,094,515	-				-1.9