Strain Fitness in Pseudomonas putida KT2440 around PP_0386

Experiment: Acanthamoeba sp., muxed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0385 and PP_5445 are separated by 343 nucleotidesPP_5445 and PP_t71 are separated by 52 nucleotidesPP_t71 and PP_0386 are separated by 16 nucleotidesPP_0386 and PP_0387 are separated by 127 nucleotides PP_0385: PP_0385 - putative serine acetyltransferase, at 465,999 to 466,553 _0385 PP_5445: PP_5445 - conserved protein of unknown function, at 466,897 to 467,067 _5445 PP_t71: PP_t71 - tRNA-Met, at 467,120 to 467,196 _t71 PP_0386: PP_0386 - Sensory box protein, at 467,213 to 470,956 _0386 PP_0387: PP_0387 - RNA polymerase, sigma 70 (sigma D) factor, at 471,084 to 472,934 _0387 Position (kb) 467 468 469 470 471Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 466.218 kb on + strand, within PP_0385at 466.299 kb on + strand, within PP_0385at 466.300 kb on - strand, within PP_0385at 466.374 kb on + strand, within PP_0385at 466.375 kb on - strand, within PP_0385at 466.456 kb on + strand, within PP_0385at 466.457 kb on - strand, within PP_0385at 466.512 kb on + strandat 466.564 kb on + strandat 466.565 kb on - strandat 466.565 kb on - strandat 466.616 kb on + strandat 466.616 kb on + strandat 466.688 kb on - strandat 466.728 kb on - strandat 466.756 kb on + strandat 466.865 kb on + strandat 466.865 kb on + strandat 466.903 kb on + strandat 466.904 kb on - strandat 466.904 kb on - strandat 466.922 kb on + strand, within PP_5445at 466.923 kb on - strand, within PP_5445at 467.006 kb on - strand, within PP_5445at 467.051 kb on + strandat 467.051 kb on + strandat 467.052 kb on - strandat 467.070 kb on - strandat 467.202 kb on - strandat 467.202 kb on - strandat 467.215 kb on - strandat 467.215 kb on - strandat 467.217 kb on - strandat 467.262 kb on - strandat 467.262 kb on - strandat 467.262 kb on - strandat 467.317 kb on - strandat 467.317 kb on - strandat 467.317 kb on - strandat 467.520 kb on + strandat 467.521 kb on - strandat 467.521 kb on - strandat 467.567 kb on + strandat 467.589 kb on + strand, within PP_0386at 467.589 kb on + strand, within PP_0386at 467.590 kb on - strand, within PP_0386at 467.766 kb on + strand, within PP_0386at 467.766 kb on + strand, within PP_0386at 467.767 kb on - strand, within PP_0386at 467.810 kb on + strand, within PP_0386at 468.093 kb on + strand, within PP_0386at 468.094 kb on - strand, within PP_0386at 468.094 kb on - strand, within PP_0386at 468.228 kb on - strand, within PP_0386at 468.311 kb on + strand, within PP_0386at 468.311 kb on + strand, within PP_0386at 468.312 kb on - strand, within PP_0386at 468.329 kb on + strand, within PP_0386at 468.473 kb on + strand, within PP_0386at 468.474 kb on - strand, within PP_0386at 468.474 kb on - strand, within PP_0386at 468.543 kb on + strand, within PP_0386at 468.543 kb on + strand, within PP_0386at 468.543 kb on + strand, within PP_0386at 468.638 kb on + strand, within PP_0386at 468.639 kb on - strand, within PP_0386at 468.684 kb on + strand, within PP_0386at 468.739 kb on - strand, within PP_0386at 468.739 kb on - strand, within PP_0386at 469.079 kb on + strand, within PP_0386at 469.079 kb on + strand, within PP_0386at 469.079 kb on + strand, within PP_0386at 469.079 kb on + strand, within PP_0386at 469.080 kb on - strand, within PP_0386at 469.080 kb on - strand, within PP_0386at 469.124 kb on - strand, within PP_0386at 469.329 kb on - strand, within PP_0386at 469.337 kb on + strand, within PP_0386at 469.439 kb on - strand, within PP_0386at 469.484 kb on + strand, within PP_0386at 469.631 kb on + strand, within PP_0386at 469.632 kb on - strand, within PP_0386at 469.751 kb on - strand, within PP_0386at 469.918 kb on - strand, within PP_0386at 469.950 kb on + strand, within PP_0386at 469.950 kb on + strand, within PP_0386at 469.950 kb on + strand, within PP_0386at 469.950 kb on + strand, within PP_0386at 469.950 kb on + strand, within PP_0386at 469.956 kb on + strand, within PP_0386at 469.957 kb on - strand, within PP_0386at 469.957 kb on - strand, within PP_0386at 469.957 kb on - strand, within PP_0386at 469.957 kb on - strand, within PP_0386at 470.020 kb on - strand, within PP_0386at 470.025 kb on + strand, within PP_0386at 470.026 kb on - strand, within PP_0386at 470.148 kb on + strand, within PP_0386at 470.149 kb on - strand, within PP_0386at 470.149 kb on - strand, within PP_0386at 470.313 kb on + strand, within PP_0386at 470.313 kb on + strand, within PP_0386at 470.334 kb on + strand, within PP_0386at 470.334 kb on + strand, within PP_0386at 470.334 kb on + strand, within PP_0386at 470.371 kb on + strand, within PP_0386at 470.371 kb on + strand, within PP_0386at 470.502 kb on + strand, within PP_0386at 470.503 kb on - strand, within PP_0386at 470.503 kb on - strand, within PP_0386at 470.533 kb on - strand, within PP_0386at 470.533 kb on - strand, within PP_0386at 470.601 kb on + strandat 470.763 kb on + strandat 470.764 kb on - strandat 470.764 kb on - strandat 470.832 kb on - strandat 470.992 kb on + strandat 471.033 kb on + strandat 471.033 kb on + strandat 471.034 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1
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466,218 + PP_0385 0.39 -0.9
466,299 + PP_0385 0.54 +0.0
466,300 - PP_0385 0.54 +0.2
466,374 + PP_0385 0.68 +0.4
466,375 - PP_0385 0.68 -0.0
466,456 + PP_0385 0.82 -0.7
466,457 - PP_0385 0.83 +0.1
466,512 + +0.6
466,564 + -0.8
466,565 - +0.2
466,565 - -0.3
466,616 + -0.2
466,616 + -0.6
466,688 - -0.9
466,728 - -0.3
466,756 + +0.2
466,865 + +0.1
466,865 + +0.5
466,903 + +0.4
466,904 - +0.0
466,904 - -2.3
466,922 + PP_5445 0.15 -0.6
466,923 - PP_5445 0.15 -0.3
467,006 - PP_5445 0.64 -0.1
467,051 + -0.4
467,051 + -0.9
467,052 - -1.4
467,070 - -1.4
467,202 - -2.9
467,202 - -0.3
467,215 - -2.1
467,215 - +0.2
467,217 - +1.0
467,262 - +2.8
467,262 - +0.1
467,262 - -0.5
467,317 - +0.5
467,317 - -0.0
467,317 - +1.4
467,520 + +0.3
467,521 - +1.2
467,521 - -0.0
467,567 + +0.6
467,589 + PP_0386 0.10 +1.1
467,589 + PP_0386 0.10 -0.7
467,590 - PP_0386 0.10 +0.8
467,766 + PP_0386 0.15 +0.6
467,766 + PP_0386 0.15 +0.1
467,767 - PP_0386 0.15 +1.2
467,810 + PP_0386 0.16 +0.1
468,093 + PP_0386 0.24 -0.0
468,094 - PP_0386 0.24 +1.4
468,094 - PP_0386 0.24 +0.0
468,228 - PP_0386 0.27 +0.9
468,311 + PP_0386 0.29 +0.7
468,311 + PP_0386 0.29 +1.2
468,312 - PP_0386 0.29 +0.8
468,329 + PP_0386 0.30 +0.7
468,473 + PP_0386 0.34 -0.3
468,474 - PP_0386 0.34 +0.3
468,474 - PP_0386 0.34 +0.5
468,543 + PP_0386 0.36 +1.7
468,543 + PP_0386 0.36 +0.7
468,543 + PP_0386 0.36 +0.5
468,638 + PP_0386 0.38 -0.1
468,639 - PP_0386 0.38 +0.9
468,684 + PP_0386 0.39 -0.6
468,739 - PP_0386 0.41 +0.9
468,739 - PP_0386 0.41 +0.3
469,079 + PP_0386 0.50 +0.9
469,079 + PP_0386 0.50 -0.8
469,079 + PP_0386 0.50 +0.8
469,079 + PP_0386 0.50 +0.5
469,080 - PP_0386 0.50 +0.4
469,080 - PP_0386 0.50 -0.2
469,124 - PP_0386 0.51 +0.8
469,329 - PP_0386 0.57 +0.2
469,337 + PP_0386 0.57 -0.8
469,439 - PP_0386 0.59 -0.3
469,484 + PP_0386 0.61 +0.1
469,631 + PP_0386 0.65 +0.4
469,632 - PP_0386 0.65 +0.3
469,751 - PP_0386 0.68 +0.4
469,918 - PP_0386 0.72 +1.0
469,950 + PP_0386 0.73 -0.1
469,950 + PP_0386 0.73 +0.2
469,950 + PP_0386 0.73 -0.4
469,950 + PP_0386 0.73 +0.5
469,950 + PP_0386 0.73 +0.3
469,956 + PP_0386 0.73 +0.1
469,957 - PP_0386 0.73 +0.8
469,957 - PP_0386 0.73 +1.0
469,957 - PP_0386 0.73 +0.2
469,957 - PP_0386 0.73 +1.1
470,020 - PP_0386 0.75 +0.7
470,025 + PP_0386 0.75 +1.0
470,026 - PP_0386 0.75 +0.1
470,148 + PP_0386 0.78 +1.1
470,149 - PP_0386 0.78 +0.8
470,149 - PP_0386 0.78 +1.4
470,313 + PP_0386 0.83 -0.3
470,313 + PP_0386 0.83 -0.3
470,334 + PP_0386 0.83 +1.7
470,334 + PP_0386 0.83 -0.4
470,334 + PP_0386 0.83 -0.0
470,371 + PP_0386 0.84 +1.1
470,371 + PP_0386 0.84 -0.3
470,502 + PP_0386 0.88 +1.1
470,503 - PP_0386 0.88 +0.3
470,503 - PP_0386 0.88 +0.5
470,533 - PP_0386 0.89 -0.5
470,533 - PP_0386 0.89 -0.3
470,601 + +1.8
470,763 + +0.0
470,764 - +0.8
470,764 - +0.3
470,832 - +0.2
470,992 + +1.4
471,033 + +0.2
471,033 + -0.7
471,034 - +1.3

Or see this region's nucleotide sequence