Strain Fitness in Pseudomonas putida KT2440 around PP_0384

Experiment: Acanthamoeba sp., muxed culture-1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0383 and PP_0384 are separated by 253 nucleotidesPP_0384 and PP_0385 are separated by 187 nucleotides PP_0383: PP_0383 - Lysine 2-monooxygenase, at 463,414 to 465,096 _0383 PP_0384: PP_0384 - Transcriptional regulator, AsnC family, at 465,350 to 465,811 _0384 PP_0385: PP_0385 - putative serine acetyltransferase, at 465,999 to 466,553 _0385 Position (kb) 465 466Strain fitness (log2 ratio) -2 -1 0 1 2 3at 464.483 kb on + strand, within PP_0383at 464.543 kb on - strand, within PP_0383at 464.543 kb on - strand, within PP_0383at 464.666 kb on + strand, within PP_0383at 464.667 kb on - strand, within PP_0383at 464.667 kb on - strand, within PP_0383at 464.667 kb on - strand, within PP_0383at 464.667 kb on - strand, within PP_0383at 464.667 kb on - strand, within PP_0383at 464.667 kb on - strand, within PP_0383at 464.759 kb on + strand, within PP_0383at 464.759 kb on + strand, within PP_0383at 464.760 kb on - strand, within PP_0383at 464.765 kb on + strand, within PP_0383at 464.765 kb on + strand, within PP_0383at 464.765 kb on + strand, within PP_0383at 464.766 kb on - strand, within PP_0383at 464.766 kb on - strand, within PP_0383at 464.766 kb on - strand, within PP_0383at 464.766 kb on - strand, within PP_0383at 464.766 kb on - strand, within PP_0383at 464.877 kb on - strand, within PP_0383at 464.912 kb on + strand, within PP_0383at 465.141 kb on + strandat 465.143 kb on + strandat 465.143 kb on + strandat 465.144 kb on - strandat 465.144 kb on - strandat 465.144 kb on - strandat 465.166 kb on + strandat 465.167 kb on - strandat 465.184 kb on + strandat 465.188 kb on + strandat 465.189 kb on - strandat 465.189 kb on - strandat 465.189 kb on - strandat 465.189 kb on - strandat 465.214 kb on - strandat 465.241 kb on + strandat 465.242 kb on - strandat 465.271 kb on + strandat 465.271 kb on + strandat 465.271 kb on + strandat 465.272 kb on - strandat 465.307 kb on + strandat 465.308 kb on - strandat 465.486 kb on + strand, within PP_0384at 465.486 kb on + strand, within PP_0384at 465.487 kb on - strand, within PP_0384at 465.487 kb on - strand, within PP_0384at 465.487 kb on - strandat 465.504 kb on - strand, within PP_0384at 465.591 kb on + strand, within PP_0384at 465.591 kb on + strand, within PP_0384at 465.592 kb on - strand, within PP_0384at 465.592 kb on - strand, within PP_0384at 465.592 kb on - strand, within PP_0384at 465.592 kb on - strand, within PP_0384at 465.632 kb on + strand, within PP_0384at 465.640 kb on - strand, within PP_0384at 465.649 kb on + strand, within PP_0384at 465.649 kb on + strand, within PP_0384at 465.649 kb on + strand, within PP_0384at 465.649 kb on + strand, within PP_0384at 465.650 kb on - strand, within PP_0384at 465.650 kb on - strand, within PP_0384at 465.650 kb on - strand, within PP_0384at 465.823 kb on - strandat 465.841 kb on + strandat 465.874 kb on + strandat 465.874 kb on + strandat 465.875 kb on - strandat 465.875 kb on - strandat 465.875 kb on - strandat 466.067 kb on + strand, within PP_0385at 466.149 kb on + strand, within PP_0385at 466.149 kb on + strand, within PP_0385at 466.218 kb on + strand, within PP_0385at 466.299 kb on + strand, within PP_0385at 466.300 kb on - strand, within PP_0385at 466.374 kb on + strand, within PP_0385at 466.375 kb on - strand, within PP_0385at 466.456 kb on + strand, within PP_0385at 466.457 kb on - strand, within PP_0385at 466.512 kb on + strandat 466.564 kb on + strandat 466.565 kb on - strandat 466.565 kb on - strandat 466.616 kb on + strandat 466.616 kb on + strandat 466.688 kb on - strandat 466.728 kb on - strandat 466.756 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1
remove
464,483 + PP_0383 0.64 +1.4
464,543 - PP_0383 0.67 +0.8
464,543 - PP_0383 0.67 -1.3
464,666 + PP_0383 0.74 +1.6
464,667 - PP_0383 0.74 +1.6
464,667 - PP_0383 0.74 +2.0
464,667 - PP_0383 0.74 +1.5
464,667 - PP_0383 0.74 +1.0
464,667 - PP_0383 0.74 +1.6
464,667 - PP_0383 0.74 +1.0
464,759 + PP_0383 0.80 +1.4
464,759 + PP_0383 0.80 +2.0
464,760 - PP_0383 0.80 +1.7
464,765 + PP_0383 0.80 +1.2
464,765 + PP_0383 0.80 +0.1
464,765 + PP_0383 0.80 +0.9
464,766 - PP_0383 0.80 +1.0
464,766 - PP_0383 0.80 +1.3
464,766 - PP_0383 0.80 +1.4
464,766 - PP_0383 0.80 +1.6
464,766 - PP_0383 0.80 +1.6
464,877 - PP_0383 0.87 +2.1
464,912 + PP_0383 0.89 +1.7
465,141 + +0.7
465,143 + +1.5
465,143 + +1.0
465,144 - -0.0
465,144 - -0.1
465,144 - -0.5
465,166 + +2.8
465,167 - +0.6
465,184 + +1.3
465,188 + +0.5
465,189 - +0.2
465,189 - +1.0
465,189 - +0.2
465,189 - +1.0
465,214 - +0.7
465,241 + +1.0
465,242 - +1.9
465,271 + +1.5
465,271 + +0.9
465,271 + +0.3
465,272 - +0.8
465,307 + +0.7
465,308 - -2.6
465,486 + PP_0384 0.29 +0.9
465,486 + PP_0384 0.29 +2.0
465,487 - PP_0384 0.30 +0.7
465,487 - PP_0384 0.30 +1.2
465,487 - +1.0
465,504 - PP_0384 0.33 -0.1
465,591 + PP_0384 0.52 +1.8
465,591 + PP_0384 0.52 +1.9
465,592 - PP_0384 0.52 +1.2
465,592 - PP_0384 0.52 +1.5
465,592 - PP_0384 0.52 +1.6
465,592 - PP_0384 0.52 +1.1
465,632 + PP_0384 0.61 +1.7
465,640 - PP_0384 0.63 +1.3
465,649 + PP_0384 0.65 -0.2
465,649 + PP_0384 0.65 +1.0
465,649 + PP_0384 0.65 +1.3
465,649 + PP_0384 0.65 +1.4
465,650 - PP_0384 0.65 +1.1
465,650 - PP_0384 0.65 +1.0
465,650 - PP_0384 0.65 +0.8
465,823 - +1.2
465,841 + +0.7
465,874 + -1.4
465,874 + +2.2
465,875 - +0.3
465,875 - -0.1
465,875 - +0.5
466,067 + PP_0385 0.12 +0.7
466,149 + PP_0385 0.27 -0.9
466,149 + PP_0385 0.27 -0.2
466,218 + PP_0385 0.39 -0.9
466,299 + PP_0385 0.54 +0.0
466,300 - PP_0385 0.54 +0.2
466,374 + PP_0385 0.68 +0.4
466,375 - PP_0385 0.68 -0.0
466,456 + PP_0385 0.82 -0.7
466,457 - PP_0385 0.83 +0.1
466,512 + +0.6
466,564 + -0.8
466,565 - +0.2
466,565 - -0.3
466,616 + -0.2
466,616 + -0.6
466,688 - -0.9
466,728 - -0.3
466,756 + +0.2

Or see this region's nucleotide sequence